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show each finemap region followed by its finemaps and conditinonals.
see example:
* This should be handled so that there is t…
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Thanks for the code.
I am stuck at this step 03_run-finemap.sh
I guess I should download this?
http://www.christianbenner.com/
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* smunger version:0.1.5
* Python version:3.11.5
* Operating System:ubantu
### Description
Dear Dr.Wang, I was trying to smunger input files for finemap. Everything went smoothly. However, the …
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Hi,
I was trying to run Finemap-inf and generate credible sets. But, I cannot find the outputs for credible sets. Could you please guide me on this?
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I tried many times to adjust the --locations paramter,but it could not work,
when I give it the 38:EUR, it goes wrong like that:
focus finemap: error: argument --locations: can't open '38:EUR': [Er…
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Since for `susie_rss()` (for GWAS data integration, not for xQTL where we use `susie()`) we decide to use the `polyfun::finemapper.py` wrapper, we can implement the FINEMAP method in it for free (`--m…
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## 1. Bug description
Hi I am unable to properly run finemap_loci with a quantitative GWAS.
Few things to highlight so far.
- The sample size column to do finemapping for a quant GWAS is not …
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After manual edits to the scripts mentioned in issue number 2, and using the same files as mentioned there, running the following command throws the following error:
`./run_plasma.py hap1.txt exp1.…
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I am working from the example code for FINEMAP in Finemap 1.1. However, when I try to print out_finemap:
```
out_finemap
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all the intro examples i looked at seem to run just one benchmark
eg
run: simulate * analyze * score
but in practice i see definitions like this:
run:
default: data * sim_gaussian * g…