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cumc
/
xqtl-protocol
Molecular QTL analysis protocol developed by ADSP Functional Genomics Consortium
https://cumc.github.io/xqtl-protocol/
MIT License
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option for run with unadjusted X
#1100
Chunmingl
opened
2 days ago
1
Update containers.csv
#1099
rl3328
closed
2 weeks ago
0
Update containers.csv
#1098
rl3328
closed
3 weeks ago
0
add region-name as an option in twas.ipynb
#1097
al4225
closed
1 month ago
2
minor fix - twas_mr table
#1096
Chunmingl
closed
1 month ago
1
update for parameters and corner cases
#1095
Chunmingl
closed
1 month ago
1
add quantile twas in twas.ipynb
#1094
al4225
closed
1 month ago
1
Update ld_reference_generation.ipynb
#1093
RuiDongDR
closed
1 month ago
1
add chr in the output names
#1092
al4225
closed
1 month ago
1
minor fix quantile_twas pipeline
#1091
al4225
closed
1 month ago
1
Update containers.csv
#1090
rl3328
closed
1 month ago
0
quantile_twas_weight_pipeline parameter change, add region_info
#1089
al4225
closed
1 month ago
1
minor fix for smooth data flow
#1088
Chunmingl
closed
1 month ago
1
Update containers.csv
#1087
rl3328
closed
1 month ago
0
Update containers.csv
#1086
rl3328
closed
1 month ago
0
Update the pecotmr package
#1085
rl3328
closed
1 month ago
0
protocol changes for manuscript
#1084
grennfp
closed
1 month ago
1
updated annotate_susie
#1083
rl3328
closed
1 month ago
1
fix to use ed_bovy
#1082
grennfp
closed
1 month ago
1
add vignette
#1081
grennfp
closed
1 month ago
2
add place holder for twas results with all contexts dropped.
#1080
Chunmingl
closed
1 month ago
1
add target in rss_qc
#1079
SamuelSun2000
closed
1 month ago
1
rss vignette
#1078
grennfp
closed
1 month ago
1
remove export_twas_weights_db
#1077
Chunmingl
closed
1 month ago
1
cleaned quantile_twas pipeline using pecotmr
#1076
al4225
closed
1 month ago
2
optimize data flow for ctwas variant selection
#1075
Chunmingl
closed
1 month ago
1
add variant selection
#1074
Chunmingl
closed
2 months ago
1
rare events detection in impution pipeline
#1073
rfeng2023
opened
2 months ago
0
bug in TensorQTL for sQTL analysis
#1072
rfeng2023
opened
2 months ago
0
Remove apptainer
#1071
danielnachun
closed
2 months ago
0
update example for mnm_genes
#1070
grennfp
closed
1 month ago
1
build quantas container
#1069
rfeng2023
closed
2 months ago
1
mnm_gene vignette
#1068
grennfp
closed
2 months ago
1
update mnm vignettes
#1067
grennfp
closed
2 months ago
1
merge pipelines and clean up
#1066
Chunmingl
closed
2 months ago
5
twas_pipeline function
#1065
Chunmingl
closed
2 months ago
1
Update containers.csv
#1064
rl3328
closed
2 months ago
0
add bigsnpr into pecotmr package
#1063
al4225
closed
2 months ago
0
export twas db for twas and ctwas
#1062
Chunmingl
closed
2 months ago
1
Add a QC condition for phenotype_imputation.ipynb
#1061
rl3328
closed
1 month ago
8
Update containers.csv
#1060
rl3328
closed
2 months ago
0
Debugged the [cis_results_export] for fine_mapping_post_processing.ipynb
#1059
rl3328
closed
2 months ago
1
minor fix - bring back bayes"_r"
#1058
Chunmingl
closed
2 months ago
1
Update docker.df
#1057
gaow
closed
2 months ago
0
twas output data update and twas pipeline workflow update
#1056
Chunmingl
closed
2 months ago
1
quantile_twas add expr_pred_tau, delete x_filter
#1055
al4225
closed
2 months ago
1
update output results documentation for susie_twas
#1054
grennfp
closed
2 months ago
1
minor fix mnm_genes pipeline
#1053
AnqiWang2021
closed
2 months ago
1
Update RNA_calling.ipynb
#1052
rl3328
closed
2 months ago
1
Update the RNA_calling.ipynb
#1051
rl3328
closed
2 months ago
1
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