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cumc
/
xqtl-protocol
Molecular QTL analysis protocol developed by ADSP Functional Genomics Consortium
https://cumc.github.io/xqtl-protocol/
MIT License
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fix Splicing normalization
#1004
rfeng2023
opened
5 hours ago
1
fix NA checking in phenotype imputation
#1003
rfeng2023
opened
5 hours ago
1
update my_container
#1002
AnqiWang2021
closed
4 days ago
0
add data type input, update for function changes
#1001
Chunmingl
opened
5 days ago
1
add multi-gene multivariate analysis pipeline
#1000
AnqiWang2021
opened
1 week ago
1
add option to compute LD from genotype.
#999
hsun3163
opened
1 week ago
1
TensorQTL indices possible bug
#998
minqiao
opened
1 week ago
1
update query region
#997
Chunmingl
closed
2 weeks ago
1
update
#996
zq2209
closed
3 weeks ago
1
darft - work in progress
#995
Chunmingl
closed
3 weeks ago
1
add gene target susie_rss
#994
SamuelSun2000
closed
2 weeks ago
1
summary report meta data format update
#993
Chunmingl
closed
1 month ago
1
update rna_quantification
#992
rfeng2023
closed
1 month ago
0
twas imputability/variant selection for ctwas
#991
Chunmingl
closed
1 month ago
4
add a print msg for clearer msg
#990
hsun3163
closed
2 months ago
1
Revert "Get rid of the file skipper"
#989
hsun3163
closed
2 months ago
1
Get rid of the file skipper
#988
hsun3163
closed
2 months ago
1
symlink added
#987
Bale4
closed
2 months ago
1
Add back the fsusie patch to fix the mQTL corrupted file
#986
hsun3163
closed
2 months ago
1
error in association analysis
#985
rfeng2023
opened
2 months ago
0
modify coloc pipeline
#984
rfeng2023
closed
2 months ago
1
pecotmr version bump
#983
gaow
closed
2 months ago
0
small fix
#982
AnqiWang2021
closed
2 months ago
1
modify export and overlap code for new gwas res
#981
rfeng2023
closed
2 months ago
1
small fix
#980
AnqiWang2021
closed
2 months ago
1
update qvalue function in tensorqtl cis1
#979
al4225
closed
2 months ago
1
Change the output format of rss
#978
SamuelSun2000
closed
2 months ago
2
update pecotmr image
#977
gaow
closed
2 months ago
0
set default qr_max_iter as 200, sort the result by chr and pos
#976
al4225
closed
2 months ago
1
update tabix
#975
zq2209
closed
2 months ago
1
add qvalue step in TensorQTL cis1 for quantile regression
#974
al4225
closed
2 months ago
1
fix export - use pip from susie trim instead of set_secondary
#973
rfeng2023
closed
2 months ago
1
pecotmr update
#972
gaow
closed
2 months ago
0
small fix in export - add original pkg
#971
rfeng2023
closed
2 months ago
1
rename files and add attainable codes
#970
rfeng2023
closed
2 months ago
3
protocol updates
#969
grennfp
closed
2 months ago
1
update file name and fix in export
#968
rfeng2023
closed
2 months ago
1
add scale residual as an option for quantqtl
#967
al4225
closed
2 months ago
1
minor fix
#966
zq2209
closed
2 months ago
1
minor fix
#965
zq2209
closed
2 months ago
1
tensorqtl add quantile qtl as an option
#964
al4225
closed
2 months ago
1
add geno align and pvalue ordering and remove fsusie sumstats in export
#963
rfeng2023
closed
2 months ago
2
Update containers.csv
#962
gaow
closed
2 months ago
0
update qvalue
#961
zq2209
closed
2 months ago
2
revise pip cutoff column names
#960
AnqiWang2021
closed
3 months ago
1
genotype alignment codes
#959
rfeng2023
closed
3 months ago
1
Fix a typo in KING
#958
gaow
closed
3 months ago
0
Add trans genotype per chrom job submission mode for HPC
#957
wangyf1125
closed
2 months ago
1
Add KING
#956
gaow
closed
3 months ago
0
Bump pecotmr version
#955
gaow
closed
3 months ago
0
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