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cumc
/
xqtl-protocol
Molecular QTL analysis protocol developed by ADSP Functional Genomics Consortium
https://cumc.github.io/xqtl-protocol/
MIT License
32
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Bump pecotmr version
#955
gaow
closed
3 months ago
0
quantile qtl python version by chrom using tensorqtl format
#954
al4225
closed
3 months ago
1
Use list() instead of NULL to avoid name drift
#953
SamuelSun2000
closed
3 months ago
1
bump software versions
#952
gaow
closed
3 months ago
0
Fix of pipeline
#951
SamuelSun2000
closed
3 months ago
1
Small fix and documentation update in pipeline
#950
SamuelSun2000
closed
3 months ago
1
add md5sum and remove fsusie preset res in export
#949
rfeng2023
closed
3 months ago
1
change the way of if condition for checking whether preset_variants_result has top_loci table for fsusie data
#948
kainblue100
closed
2 months ago
2
Update containers.csv
#947
gaow
closed
3 months ago
0
test
#946
kainblue100
closed
3 months ago
0
fix output format
#945
zq2209
closed
3 months ago
1
update mash_preprocessing
#944
AnqiWang2021
closed
3 months ago
1
fix tensorQTL bug
#943
hsun3163
closed
3 months ago
2
Gene annotation should also generate relevant files for `--phenoIDFile`
#942
gaow
opened
3 months ago
0
pseudobulk expression notebooks
#941
al4225
closed
3 months ago
1
update cis
#940
zq2209
closed
3 months ago
1
fix cis_2
#939
zq2209
closed
3 months ago
1
fix
#938
zq2209
closed
3 months ago
1
My container update
#937
gaow
closed
3 months ago
0
My container update
#936
gaow
closed
3 months ago
0
update trans
#935
zq2209
closed
3 months ago
1
update my_container
#934
zq2209
closed
3 months ago
0
fix
#933
rfeng2023
closed
3 months ago
1
update trans
#932
zq2209
closed
3 months ago
1
rename chr col for psichomics chr separation
#931
grennfp
closed
3 months ago
2
gene annotation fixes for splicing
#930
grennfp
closed
3 months ago
2
fix new names in mnm for one isoform case
#929
rfeng2023
closed
3 months ago
1
add qvalue to tensorQTL container
#928
danielnachun
closed
3 months ago
0
Try to fix a bug during post-processing fsusie result
#927
kainblue100
closed
3 months ago
1
fix mash_prerpocessing
#926
AnqiWang2021
closed
3 months ago
1
fix environment vars for docker.df
#925
danielnachun
closed
3 months ago
0
update tensorqtl
#924
zq2209
closed
3 months ago
12
update example
#923
AnqiWang2021
closed
3 months ago
1
RNA_calling.ipynb updates
#922
grennfp
closed
3 months ago
1
STAR update to trigger rna_quantification update
#921
gaow
closed
3 months ago
1
minor fix
#920
Chunmingl
closed
3 months ago
1
add more tryCatch in export
#919
rfeng2023
closed
3 months ago
4
update coloc analysis - sos loop by context
#918
rfeng2023
closed
3 months ago
8
sort psichomics data in normalization for imputation later
#917
grennfp
closed
3 months ago
1
add fsusie for export
#916
rfeng2023
closed
3 months ago
1
Update pecotmr
#915
gaow
closed
3 months ago
0
use r-flashier 1.0.21
#914
danielnachun
closed
3 months ago
0
fixed example and rename-chr
#913
dianacornejo
closed
3 months ago
1
fix
#912
AnqiWang2021
closed
3 months ago
1
use bioconductor-variantannotation 1.48
#911
danielnachun
closed
3 months ago
0
limit threads for linear algebra libraries
#910
danielnachun
closed
3 months ago
0
Remove sample analysed list & Correct identifier key
#909
wangyf1125
closed
4 months ago
1
Bump pecotmr version
#908
gaow
closed
4 months ago
0
fix error in s3 path
#907
hsun3163
closed
4 months ago
1
fsusie patch update
#906
hsun3163
closed
4 months ago
1
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