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cumc
/
xqtl-protocol
Molecular QTL analysis protocol developed by ADSP Functional Genomics Consortium
https://cumc.github.io/xqtl-protocol/
MIT License
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use r-flashier 1.0.21
#914
danielnachun
closed
4 months ago
0
fixed example and rename-chr
#913
dianacornejo
closed
4 months ago
1
fix
#912
AnqiWang2021
closed
4 months ago
1
use bioconductor-variantannotation 1.48
#911
danielnachun
closed
4 months ago
0
limit threads for linear algebra libraries
#910
danielnachun
closed
4 months ago
0
Remove sample analysed list & Correct identifier key
#909
wangyf1125
closed
4 months ago
1
Bump pecotmr version
#908
gaow
closed
4 months ago
0
fix error in s3 path
#907
hsun3163
closed
4 months ago
1
fsusie patch update
#906
hsun3163
closed
4 months ago
1
accomodate s3 path
#905
hsun3163
closed
4 months ago
2
fix export for gwas case and add preset pip
#904
rfeng2023
closed
4 months ago
1
clean up with prior input
#903
Chunmingl
closed
4 months ago
1
patch for fsusie
#902
hsun3163
closed
4 months ago
1
add TSS in export
#901
rfeng2023
closed
4 months ago
1
minor fix
#900
zq2209
closed
4 months ago
1
fix the logic for genotype set to missing
#899
dianacornejo
closed
4 months ago
1
minor fixes to phenotype preprocessing scripts
#898
grennfp
closed
4 months ago
1
fix export min corr function
#897
rfeng2023
closed
4 months ago
1
fix mixture_prior
#896
AnqiWang2021
closed
4 months ago
1
minor fix
#895
zq2209
closed
4 months ago
1
pecotmr image version bump
#894
gaow
closed
4 months ago
0
modification of export pipeline
#893
rfeng2023
closed
4 months ago
1
re organize export of susie results
#892
rfeng2023
closed
4 months ago
1
minor update
#891
zq2209
closed
4 months ago
1
merged pipeline of mvsusie and mrmash
#890
Chunmingl
closed
4 months ago
1
update susie_twas
#889
zq2209
closed
4 months ago
1
Update pecotmr image
#888
gaow
closed
4 months ago
0
fix
#887
AnqiWang2021
closed
4 months ago
1
fsusie fix (test)
#886
hsun3163
closed
4 months ago
4
update mash_preprocessing
#885
AnqiWang2021
closed
4 months ago
1
add empty check
#884
rfeng2023
closed
4 months ago
1
My container update
#883
gaow
closed
4 months ago
0
Release pecotmr 0.1.37
#882
gaow
closed
4 months ago
0
fix warning
#881
rfeng2023
closed
4 months ago
1
fix original names as tuples
#880
rfeng2023
closed
4 months ago
1
add flip checking in GWAS post processing
#879
rfeng2023
closed
4 months ago
1
update cis workhorse
#878
rfeng2023
closed
4 months ago
3
fix empty_elements in cis workhorse
#877
rfeng2023
closed
4 months ago
1
My container update
#876
gaow
closed
4 months ago
1
Adjust output file name
#875
wangyf1125
closed
4 months ago
3
update AD post processing
#874
rfeng2023
closed
4 months ago
2
gene_annotation:convert ProjID to SampleID
#873
al4225
closed
4 months ago
6
update regional data generation in cis workhorse
#872
rfeng2023
closed
4 months ago
10
updates
#871
zq2209
closed
4 months ago
1
update codes related to sQTL
#870
rfeng2023
closed
4 months ago
8
add options to filter methods and coverages in gwas and qtl overlapping
#869
rfeng2023
closed
4 months ago
1
Generate sample list & remove region list restriction
#868
wangyf1125
closed
4 months ago
3
skip analysis pip parameter addition
#867
SamuelSun2000
closed
4 months ago
1
update my_container
#866
al4225
closed
5 months ago
0
add 2 paras and error catch
#865
SamuelSun2000
closed
5 months ago
1
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