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cumc
/
xqtl-protocol
Molecular QTL analysis protocol developed by ADSP Functional Genomics Consortium
https://cumc.github.io/xqtl-protocol/
MIT License
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fix mixture_prior
#896
AnqiWang2021
closed
6 months ago
1
minor fix
#895
zq2209
closed
6 months ago
1
pecotmr image version bump
#894
gaow
closed
6 months ago
0
modification of export pipeline
#893
rfeng2023
closed
6 months ago
1
re organize export of susie results
#892
rfeng2023
closed
6 months ago
1
minor update
#891
zq2209
closed
6 months ago
1
merged pipeline of mvsusie and mrmash
#890
Chunmingl
closed
6 months ago
1
update susie_twas
#889
zq2209
closed
6 months ago
1
Update pecotmr image
#888
gaow
closed
6 months ago
0
fix
#887
AnqiWang2021
closed
6 months ago
1
fsusie fix (test)
#886
hsun3163
closed
6 months ago
4
update mash_preprocessing
#885
AnqiWang2021
closed
6 months ago
1
add empty check
#884
rfeng2023
closed
6 months ago
1
My container update
#883
gaow
closed
6 months ago
0
Release pecotmr 0.1.37
#882
gaow
closed
6 months ago
0
fix warning
#881
rfeng2023
closed
6 months ago
1
fix original names as tuples
#880
rfeng2023
closed
6 months ago
1
add flip checking in GWAS post processing
#879
rfeng2023
closed
6 months ago
1
update cis workhorse
#878
rfeng2023
closed
6 months ago
3
fix empty_elements in cis workhorse
#877
rfeng2023
closed
6 months ago
1
My container update
#876
gaow
closed
6 months ago
1
Adjust output file name
#875
wangyf1125
closed
6 months ago
3
update AD post processing
#874
rfeng2023
closed
6 months ago
2
gene_annotation:convert ProjID to SampleID
#873
al4225
closed
6 months ago
6
update regional data generation in cis workhorse
#872
rfeng2023
closed
6 months ago
10
updates
#871
zq2209
closed
6 months ago
1
update codes related to sQTL
#870
rfeng2023
closed
6 months ago
8
add options to filter methods and coverages in gwas and qtl overlapping
#869
rfeng2023
closed
6 months ago
1
Generate sample list & remove region list restriction
#868
wangyf1125
closed
6 months ago
3
skip analysis pip parameter addition
#867
SamuelSun2000
closed
6 months ago
1
update my_container
#866
al4225
closed
6 months ago
0
add 2 paras and error catch
#865
SamuelSun2000
closed
6 months ago
1
first version for gwas post and overlapping with qtl
#864
rfeng2023
closed
6 months ago
2
update metabolomics trans
#863
zq2209
closed
6 months ago
1
Bump pecotmr version
#862
gaow
closed
6 months ago
0
Correct phenotype by restrict it to cis_list
#861
wangyf1125
closed
6 months ago
1
sQTL data production related modifications
#860
rfeng2023
closed
6 months ago
1
My container update
#859
al4225
closed
6 months ago
1
Release pecotmr image update
#858
gaow
closed
6 months ago
0
Correct customized cis windows matching part
#857
wangyf1125
closed
6 months ago
1
var name change
#856
SamuelSun2000
closed
6 months ago
1
change to numeric version
#855
SamuelSun2000
closed
6 months ago
1
fix
#854
SamuelSun2000
closed
6 months ago
1
Susie_rss update
#853
SamuelSun2000
closed
6 months ago
2
pecotmr version update
#852
gaow
closed
6 months ago
0
fix
#851
rfeng2023
closed
6 months ago
1
add process to check the cs with all variants pip <0.05
#850
rfeng2023
closed
6 months ago
1
update coloc pipeline
#849
rfeng2023
closed
6 months ago
1
My container update
#848
gaow
closed
6 months ago
0
Bump pecotmr version
#847
gaow
closed
6 months ago
0
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