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Hey there!
Thanks for the useful tool!
I was wondering, do you have any plans to implement support for multi channel fluorescence images (mIF)?
I tested registering an H&E slide with DAPI ( w…
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As a user I would like to be able to analyse data that comes from the fluorescence detector. In https://github.com/DiamondLightSource/mx-bluesky/issues/236 we found that we could write out data write …
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8 elements
i0 for before the sample a
and IT (i t transmission) for after the sample
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### Operating system
win10
### Platform
64
### OpenSlide Python version
1.3.1
### OpenSlide version
3.4.1/4.0
### Slide format
czi
### Issue details
I am not able to read the czi file prope…
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To be able to routinely do fluroescence scans we would need to be able to put the data into ispyb such as https://ispyb.diamond.ac.uk/dc/visit/cm37235-2/ty/mca/id/15180.
## Acceptance Criteria
* W…
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Hi there! I tried fluorescence deconvolution with the example notebook and encountered a few issues:
1) In file `waveorder_reconstructor.py`, `Hz_det_setup` calls `gen_Pupil` function which is miss…
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After capturing fluorescence data we should trigger zocalo to analyse it. To do this zocalo needs a blank recipe and the following parameters:
```python
params = {
"inputFile": "/dls/i24/data…
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**追加機能についての概要**
Currently, selecting an cell ROI in VISUALISE-> Select Roi ->cell_roi will make this appear in VISUALISE -> fluorescence (if ref image is linked). However, Selecting an fluorescence I…
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GDA reads the data out of the xspress3 directly from PVs then writes it to it's own file format. However, the xspress3 IOC has the ability to write HDF files, which we would like to use. The first ste…
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Hi
When I input the multichannel fluorescence intensity of a cell in TMAC, sometimes the output is all 1.
Have you ever seen this phenomenon? Also, do you know the cause?