mehta-lab waveorder issues

mehta-lab / waveorder

Wave optical models and inverse algorithms for label-agnostic imaging of density & orientation.

BSD 3-Clause "New" or "Revised" License

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issues

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Merge `alg-dev` into main ahead of release

#171 talonchandler opened 12 hours ago
0
Vector-optics birefringence reconstruction prototype

#170 talonchandler opened 2 weeks ago
0
New release

#169 ziw-liu opened 2 weeks ago
3
Bump Python

#168 ziw-liu closed 2 weeks ago
0
Bump Python

#167 ziw-liu closed 2 weeks ago
0
Fluorescence deconvolution issues

#166 Alpaca233 opened 3 weeks ago
1
Authorship and release updates

#165 talonchandler closed 1 month ago
0
Phase reconstruction is invariant to voxel-size

#164 talonchandler closed 2 months ago
0
Non-negative fluorescence output?

#163 ziw-liu opened 3 months ago
2
fix bug finding focus in stack with only one slice

#162 ieivanov closed 3 months ago
2
3D phase reconstruction should not use reflection padding

#161 talonchandler opened 3 months ago
2
PTI example jupyter notebook to script and .html

#160 talonchandler closed 3 months ago
7
Update a single PTI example notebook

#159 talonchandler closed 4 months ago
3
Link BIA data next to examples

#158 talonchandler closed 4 months ago
0
Prepare README for 2.0.0

#157 talonchandler closed 4 months ago
0
M1 installation documentation

#156 talonchandler closed 4 months ago
0
Document order-dependent scripts

#155 talonchandler closed 4 months ago
0
Tests fail on macbook with incomplete MPS support

#154 talonchandler opened 4 months ago
6
Update background estimation to use torch

#153 ziw-liu closed 5 months ago
1
[Bug] Overlapping rings in phase transfer function

#152 ziw-liu opened 9 months ago
5
Phase transfer function is numerically small

#151 ziw-liu opened 9 months ago
3
Device agnostic compute for polarization

#150 ziw-liu closed 5 months ago
3
`waveorder` handles all rotational quantities (including retardance) in radians

#149 talonchandler closed 10 months ago
2
Add rotate and flip orientation options to `waveorder` options

#148 talonchandler closed 10 months ago
3
Simplify dependencies

#147 talonchandler closed 10 months ago
0
Unused `pycromanager>=0.13.2` requirement

#146 ieivanov closed 10 months ago
0
5D padding

#145 edyoshikun closed 4 months ago
2
Support GPUs via `torch`

#144 talonchandler opened 11 months ago
1
Remove `waveorder_reconstructor` and `waveorder_simulator` files

#143 talonchandler opened 11 months ago
1
Move PTI reconstructions to `torch` and `models`

#142 talonchandler opened 11 months ago
0
Fix readme figure

#141 talonchandler closed 11 months ago
0
Divide by zero during phase normalization

#140 talonchandler opened 11 months ago
0
Torch warning about copying tensors

#139 talonchandler opened 11 months ago
1
Specify meshgrid indexing order

#138 talonchandler closed 11 months ago
0
torch meshgrid warning

#137 talonchandler closed 11 months ago
0
close figure after saving

#136 ieivanov closed 11 months ago
0
Fix threshold-free focus-finding edge case

#135 talonchandler closed 11 months ago
0
Remove `__init__` imports

#134 talonchandler closed 11 months ago
1
waveorder changes matplotlib backend at import

#133 ieivanov closed 11 months ago
2
Add optional parameters `plot_path` and `threshold_FWHM` to `focus_from_transverse_band`

#132 talonchandler closed 11 months ago
4
Match parameters to simplify `recOrder`-`waveorder` interface

#131 talonchandler closed 11 months ago
0
Make `torch` optional dependency?

#130 ieivanov closed 11 months ago
4
Focus-finding features

#129 talonchandler closed 11 months ago
0
`isotropic_fluorescent_thick_3d` model

#128 talonchandler closed 1 year ago
1
Rename model from `anisotropic_thin` to `oriented_thick`

#127 talonchandler closed 1 year ago
0
Adding padding and tile processing

#126 edyoshikun closed 4 months ago
4
Remove duplicate test

#125 ziw-liu closed 1 year ago
1
Add option for axial flip of `phase_thick_3d` transfer function

#124 talonchandler closed 1 year ago
2
`illumination_wavelength` -> `wavelength_illumination`

#123 talonchandler closed 1 year ago
0
Migrate fluorescence reconstructions to `torch` and `model`-based structure

#122 talonchandler opened 1 year ago
4