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mehta-lab
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waveorder
Wave optical models and inverse algorithms for label-agnostic imaging of density & orientation.
BSD 3-Clause "New" or "Revised" License
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3
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Migrate fluorescence reconstructions to `torch` and `model`-based structure
#122
talonchandler
opened
1 year ago
4
`alg-dev` branch merge to `main`
#121
talonchandler
closed
11 months ago
2
Remove kwargs from reconstructions
#119
talonchandler
closed
1 year ago
0
Prepare polarization algorithms for integration with `recOrder`
#118
talonchandler
closed
1 year ago
1
Phase 2D + 3D refactor
#117
talonchandler
closed
1 year ago
2
Pin README links
#116
talonchandler
closed
1 year ago
0
Fix link to example
#115
talonchandler
closed
1 year ago
0
Prepare for `waveorder==1.0.0` release
#114
talonchandler
closed
1 year ago
5
Removing I/O module
#112
ziw-liu
closed
1 year ago
5
PR docs
#111
talonchandler
closed
1 year ago
1
New Stokes and Mueller module
#110
talonchandler
closed
1 year ago
16
Add .git-blame-ignore-revs
#109
talonchandler
closed
1 year ago
0
Replace OpenCV with pillow
#108
ziw-liu
closed
1 year ago
2
`opencv-python` is taking >30 minutes to build on M1
#107
talonchandler
closed
1 year ago
5
README figure is low-res and transparent
#106
talonchandler
closed
11 months ago
2
README copy edits
#105
talonchandler
closed
1 year ago
0
uPTI -> PTI; black formatting; improved comments
#104
talonchandler
closed
1 year ago
3
Make "Stokes transform" consistent between full (used by QLIPP) and linear (used by PTI) Stokes polarimeters
#103
talonchandler
closed
1 year ago
2
Slow birefringence reconstruction for z-stacks
#102
edyoshikun
closed
1 year ago
6
Improve README.md
#101
talonchandler
closed
1 year ago
2
Improve README.md
#100
talonchandler
closed
1 year ago
1
Drop 3.7 and add 3.8, 3.9, 3.10
#99
talonchandler
closed
1 year ago
0
Bump Python version
#98
ziw-liu
closed
1 year ago
0
`napari.Viewer()` fails after `import waveorder` in OnDemand session
#97
talonchandler
closed
1 year ago
1
Added example for multiple input deconvolution
#96
Soorya19Pradeep
closed
1 year ago
3
`WaveorderReader` uses `glob` to read a folder of ome-tiffs
#95
talonchandler
closed
1 year ago
6
`WaveorderWriter` is not compatible with `napari-ome-zarr` reader
#94
talonchandler
closed
1 year ago
6
`WaveorderReader` should give more informative error messages
#93
talonchandler
closed
1 year ago
2
Find focus by optimizing a transverse spatial frequency band
#92
talonchandler
closed
1 year ago
3
`lambda_illu`, `NA_obj`, and `NA_illu` names can be improved
#91
talonchandler
closed
11 months ago
1
Odd-sized dimensions use incorrect frequency coordinates
#90
talonchandler
closed
11 months ago
1
estimate focus slice during 2D phase from brightfield reconstruction
#89
mattersoflight
closed
11 months ago
1
Replace custom CuPy implementation of SciPy APIs
#88
ziw-liu
opened
1 year ago
3
Rename `master` to `main`
#87
ziw-liu
closed
1 year ago
0
Pin pywavelets version
#86
talonchandler
closed
1 year ago
3
improve readability of waveOrder
#85
mattersoflight
closed
1 year ago
0
BSD 3-clause
#84
talonchandler
closed
1 year ago
0
Don't delete test data
#83
talonchandler
closed
1 year ago
0
Bump version to 1.0.0rc0
#82
ieivanov
closed
1 year ago
3
Fix typo and update contact info in `setup.py`
#81
talonchandler
closed
1 year ago
0
Update documentation of waveorder_reconstructor.py
#80
mattersoflight
closed
1 year ago
0
Pycromanager data reader for WaveorderReader class
#79
ieivanov
closed
1 year ago
6
`setup.py` includes line: `python_requies = '==3.7'`
#78
talonchandler
closed
1 year ago
0
Fix ome-tif to zarr converter for acquisitions with micromanager beta
#77
talonchandler
closed
1 year ago
0
Waveorder multiprocessing scripts in example folder
#76
talonchandler
closed
2 years ago
0
multiprocess for QLIPP & deconvolution
#75
JohannaRahm
closed
2 years ago
0
updated documentation of waveorder_microscopy
#74
lihaoyeh
closed
2 years ago
0
multiprocess script refactoring, set default to run full job
#73
JohannaRahm
closed
2 years ago
0
Script conversion
#71
lihaoyeh
closed
2 years ago
0
reconstruction with GPU seems is limited by GPU RAM
#70
mattersoflight
closed
1 year ago
0
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