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mehta-lab
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waveorder
Wave optical models and inverse algorithms for label-agnostic imaging of density & orientation.
BSD 3-Clause "New" or "Revised" License
15
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multiprocess script refactoring, set default to run full job
#73
JohannaRahm
closed
2 years ago
0
Script conversion
#71
lihaoyeh
closed
2 years ago
0
reconstruction with GPU seems is limited by GPU RAM
#70
mattersoflight
closed
1 year ago
0
Test updates
#68
camFoltz
closed
2 years ago
1
update uPTI example notebooks
#67
lihaoyeh
closed
2 years ago
0
merge master into instrument_tensor
#66
ieivanov
closed
2 years ago
0
Added notebooks that process the corresponding data reported in the uPTI paper
#65
lihaoyeh
closed
2 years ago
0
Added a function to compute 3D orientation continuity map
#64
lihaoyeh
closed
2 years ago
0
wrap up stitching-relavant functions and some compute functions for uPTI pipelines
#63
lihaoyeh
closed
2 years ago
0
Updated units for uPTI reconstructions, merged example notebooks
#62
lihaoyeh
closed
2 years ago
0
WaveorderReader get_array position optional
#61
ieivanov
closed
2 years ago
1
Reader writer fixes
#60
camFoltz
closed
2 years ago
4
WaveOrder multipage tiff reader needs to close the tifffile after opening, otherwise a warning is thrown.
#59
camFoltz
closed
2 years ago
1
More efficient GPU compute
#58
ieivanov
closed
2 years ago
2
WaveorderWriter default array name
#57
ieivanov
closed
2 years ago
2
np.float is deprecated and throws a warning when used. Need to switch to plain float()
#56
camFoltz
closed
2 years ago
1
Instrument tensor reconstruction
#55
ieivanov
closed
2 years ago
9
WaveorderReader get_image is not implemented for ZarrReader
#54
ieivanov
closed
2 years ago
1
WaveorderReader should try to guess data_type and make that an optional argument
#53
ieivanov
closed
2 years ago
3
WaveorderReader ome-zarr contrast limits
#52
ieivanov
closed
2 years ago
3
WaveorderReader should set only the first channel as active on ome-zarr metadata
#51
ieivanov
closed
2 years ago
2
WaveroderReader should set ome-zarr metadata color to FFFFFF
#50
ieivanov
closed
2 years ago
2
PyPi Release Prep
#49
camFoltz
closed
2 years ago
0
Fix bug in reading data with channels that don't have z stack
#48
ieivanov
closed
2 years ago
0
Interface of WaveorderWriter.writer is not "pythonic"
#47
ieivanov
closed
2 years ago
3
Multipage reader API change
#46
camFoltz
closed
2 years ago
0
Partial FOV Loading
#45
camFoltz
closed
1 year ago
1
Tiled deconvolution
#44
camFoltz
closed
1 year ago
1
UPTI File Reader
#43
camFoltz
closed
2 years ago
3
expose the auto-regularization search range to the deconvolution func…
#42
lihaoyeh
closed
3 years ago
0
add specific catch
#41
camFoltz
closed
3 years ago
0
fix bug in MM meta
#40
camFoltz
closed
3 years ago
0
Multipagetiff optmization
#39
camFoltz
closed
3 years ago
0
Zarr reader
#38
camFoltz
closed
3 years ago
1
OMEZarr HCS Writer
#37
camFoltz
closed
3 years ago
1
Writer v2
#36
camFoltz
closed
3 years ago
2
Automatically choose regularization parameters with L-curve
#35
tiffchien
closed
3 years ago
2
Update the code for fluorescence deconvolution
#34
lihaoyeh
closed
3 years ago
4
Update the calibration scheme
#33
lihaoyeh
closed
3 years ago
0
add padding
#32
camFoltz
closed
3 years ago
0
Denoise padding
#31
camFoltz
closed
3 years ago
0
fix bug in z_step_size setter
#30
camFoltz
closed
3 years ago
0
add z_step_size to attributes from metadata
#29
camFoltz
closed
3 years ago
0
Interrupted acquisitions
#28
bryantChhun
closed
3 years ago
2
update uPTI solver
#27
lihaoyeh
closed
3 years ago
0
partial loading of large ome.tiff files
#26
bryantChhun
closed
3 years ago
2
acquisitions that are stopped early produce incorrect zarr outputs
#25
bryantChhun
closed
3 years ago
1
Release 1.0
#24
bryantChhun
closed
1 year ago
0
Expose step_size from metadata
#23
camFoltz
closed
3 years ago
1
Enable parallel computing and synchronization
#22
bryantChhun
closed
1 year ago
1
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