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I used the following code to calculate the model's parameter count:
```
from natten.flops import get_flops
model = model.cuda(gpu)
x = [torch.zeros(1, 3, 480, 640, dtype = torch.float32)…
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I encountered an issue when running the metaVF.py script in the MetaVF toolkit. Specifically, the makeblastdb command executed within the Snakemake workflow fails to generate all expected output file…
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Hi there,
I am trying to use the GROND database for an analysis with 16S long read sequences. I am attempting to train the classifier starting with this code:
qiime feature-classifier extract-re…
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Thanks for your ongoing work on this tool! Hitting an odd issue:
```bash
docker run --rm -it -v $(pwd):$(pwd) -w $(pwd) quay.io/biocontainers/ncbi-amrfinderplus:4.0.3--h283d18e_0
mkdir db_down…
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Hi,
I manage to make snpArcher work on dataset with medium size genomes (400Mb) but I got errors for bigger genomes (2Gb) and when job are taking to much time and ressources. I think I set the slur…
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i used to have terraria on my ps3 me and my brother used to play all the time so i wanted to relive these memories and i found this. i have the real version of terraria on steam and i was like yeah i …
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**Snakemake version**
```
$ snakemake --version
8.20.6
```
Using macOS.
**Describe the bug**
Even on successful runs, ``-q all`` or ``--quiet all`` does not hide any stdout or stder…
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Since extensions are not really standardized (e.g., FASTA alignments can have `.fasta`, `.afa`, `.fna`, or `.faa` extensions), it would be useful if we could specify the format of the input (and outpu…
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Hello devs,
I ran into this error running Indexlr in python on a linux x64 system. Below is the code to replicate this error:
```python
from btllib import Indexlr, IndexlrFlag
assembly_path =…
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**CHM13V2 T2T Assembly**
```bash
wget https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/914/755/GCF_009914755.1_T2T-CHM13v2.0/GCF_009914755.1_T2T-CHM13v2.0_genomic.fna.gz
snipe sketch --ref GCF_00…