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ncbi
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amr
AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and protein sequence.
https://www.ncbi.nlm.nih.gov/pathogens/antimicrobial-resistance/AMRFinder/
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hmmsearch is failing to execute properly
#144
xeniaroda29
opened
2 days ago
2
Update for Makefile changes from release version
#143
evolarjun
closed
1 month ago
0
Updates to Makefile for increased compatibility
#142
evolarjun
closed
2 months ago
0
Errors using gff3 file from bakta
#141
minjaekim45
closed
2 months ago
5
Different results when using annotation files in the command line
#140
MostafaYA
closed
2 months ago
8
Allow download of specific database versions
#139
marchoeppner
opened
3 months ago
3
AMRProt
#138
Nanderson246
opened
5 months ago
5
AMRFinderPlus version 3.12.8
#137
evolarjun
closed
5 months ago
0
fasta file identifier
#136
Fla1487
closed
5 months ago
4
GFF file
#135
meg256
closed
5 months ago
5
No POINT results in combine PROT+NUCL mode
#134
bvalot
closed
6 months ago
5
Is it possible to get the abundance of each AMR?
#133
pedres
closed
8 months ago
11
Makefile: add linker flags for binaries
#132
kbipinkumar
closed
5 months ago
1
Makefile: add $(DESTDIR) variable to use GNU make's staged Install
#131
kbipinkumar
closed
8 months ago
2
Makefile bug
#130
cjw85
closed
4 months ago
9
point mutation in Enterobacter spp
#129
Juandemendieta
closed
11 months ago
5
Literature reference for aac(6')-Ib3
#128
kalilamali
closed
12 months ago
4
Problems identifying MCR-9 genes
#127
HilaryESR
closed
1 year ago
4
amrfinder running with options --ident_min and --coverage_min
#126
stalact
opened
1 year ago
1
Multiple result
#125
LuisSolisLxr
closed
1 year ago
2
instructions on database download via command line
#124
nick-youngblut
closed
8 months ago
26
intermittent 1;31m*** ERROR ***
#123
taffners
opened
1 year ago
10
Release 3.11.14
#122
evolarjun
closed
1 year ago
0
Minor typo in wiki
#121
jvhagey
closed
1 year ago
2
amrfinder_update cannot connect to FTP and thus download #bug #help
#120
geboro
opened
1 year ago
11
Gff file mismatch -- non-printable character
#119
cizydorczyk
closed
1 year ago
14
BLASTN causing crash/core dump with ~1% of samples (tested on 3.11.2 and 3.11.11)
#118
dutchscientist
closed
1 year ago
21
Release 3.11.11
#117
evolarjun
closed
1 year ago
0
Release 3.11.8
#116
evolarjun
closed
1 year ago
0
Empty NUC_FASTA_OUT
#115
GomathiNayagam
closed
1 year ago
6
what does "Strand" mean in the output?
#114
augustkx
closed
1 year ago
6
Upgrade to version 3.11.4
#113
evolarjun
closed
1 year ago
0
question - how to install older database?
#112
kapsakcj
closed
1 year ago
11
[Feature request] Option to use Diamond instead of Blast
#111
jolespin
opened
1 year ago
8
amrfinder-3.11.2 test_amrfinder.sh :: failure
#110
EricDeveaud
closed
1 year ago
8
Not able to get list of databases in Galaxy
#108
vmevada102
closed
1 year ago
2
Fix GitHub bug caused by change in conda
#107
evolarjun
closed
1 year ago
0
Cannot open file '/tmp
#106
wenkui123
closed
1 year ago
2
Test data updated for db release 2022-12-19.1
#105
evolarjun
closed
1 year ago
0
Batch / Parallel running with .fasta (.ffn) ; .faa ; and .gff from Prokka output
#104
rickyalfaray
closed
1 year ago
6
Release 3.11.2
#103
evolarjun
closed
1 year ago
0
Database requires sofware version at least 3.10.16
#102
pedrofteixeira
closed
1 year ago
11
Absolute target for *latest* symbolic link
#101
oschwengers
closed
1 year ago
4
Fix for Github issue #99
#100
evolarjun
closed
1 year ago
0
Error in "amr_report.cpp"
#99
loalon
closed
1 year ago
18
Include nucleotide substitution for point mutations
#98
flashton2003
opened
1 year ago
3
Incorrect Gene Symbol in Output?
#97
cizydorczyk
closed
1 year ago
3
How to request addition of virulence genes?
#96
kapsakcj
closed
1 year ago
2
Bug in order of operations for mac bioconda test
#95
evolarjun
closed
1 year ago
0
a bug maybe? only the first one could be correctly annotated when multiple copies of amr exist
#94
fengyuchengdu
closed
1 year ago
5
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