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Hi, thanks for this amazing tool.
I ran successfully the pipeline but the Similarity search, processed files
* _gene_ontology_terms.tsv
are all empty. What am I doing wrong? I would lik…
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# Changelog
* uns (Dataset Metadata)
* Updated the requirements for `spatial` to include descendants of _Visium Spatial Gene Expression_.
* Updated the requirements for spatial['is_single']…
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Pascale
- [x] https://github.com/geneontology/go-annotation/issues/4727
- [ ] annotation-contributors.md
- [ ] collaborations.md
- [ ] contributing-go-term.md
- [ ] contributing-go.md
- [ ] de…
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# Statement of request
From an email of Jonathan's:
> I've been seeing in a number of places people using GO annotations to classify general types of genes/proteins.
>
> We have of course HGNC,…
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# Changelog
## X (Matrix Layers)
- Updated Visium Spatial Gene Expression table row to **Descendants** of Visium Spatial Gene Expression
- Added matrix requirements for Visium CytAssist Spatial…
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**Background**
The script addon.py already have functions for preprocessing, normalization, clustering, cell type prediction, gene list for cells/tissues, gene expression per cell types, DEG per tiss…
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STATUS: DRAFT
Use case:Queries that can unify Gene expression/function/markers whether they are proteins, genes or transcripts.
TBD:
- Do we simply unify proteins/transcripts/genes or do we ma…
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## Background
List of ids for every widget and its column that cant be disabled
Format below:
widget - column to be fixed
## Tasks
**Target profile**
- [ ] Known Drugs - Drug
- [ ] Safety - Safe…
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Motivated by https://github.com/dhimmel/gene-ontology/issues/5
@NegarJanani to attempt to update this repo, you can:
1. install the conda environment
2. follow the readme execution command
Y…
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* InterPro ID / label
IPR000104
* **Example sequences with problematic annotation (ID + gene/protein name):**
* IPR000104
Antifreeze protein, type I may be connected to MF GO:0016172 antifreez…