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Dear,
Thank you for the excellent plotting software.
The setting `max_nb_lines` controls how many highest scoring alignments to include in the dot plot, and is fixed in the source code to be `10…
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Can you precise in the doc what is changing with minimap2 when analysing long reads ?
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**Describe the bug**
In the 'Launch map analysis' feature, using the 'New alignment' function, I'm having trouble uploading target and/or query files. I submit the job and the files start to upload, …
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Hello,
I've made a conda package for dgenies (https://github.com/bioconda/bioconda-recipes/pull/21621). I have one problem with it: the configuration directory gets installed in $PATH_TO_CONDA_ENV/li…
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Trying to do a local install with conda on a M1 Mac running Ventura 13.5.2 (running python3.10.10)
When running:
conda create -c conda-forge -c bioconda -n dgenies dgenies
I get this error:
…
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Hi,
Other software packages such as pilon or samtools include an option to limit the processing on a set of scaffolds. The user provides a text file with one scaffold name per line and the correcti…
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**Submitting author:** @JeanMainguy (Jean Mainguy)
**Repository:** https://github.com/genotoul-bioinfo/Binette
**Branch with paper.md** (empty if default branch):
**Version:** v1.0.0
**Editor:** @arf…
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**Submitting author:** @SarahMaman (MAMAN Sarah)
**Repository:** https://github.com/Bios4Biol/intronSeeker
**Branch with paper.md** (empty if default branch): master
**Version:** v1.0.0
**Editor:** @k…
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### Description of the bug
Hi
I tried to skip all preprocessing qc steps using the following skipping options but I got a java null error on some path value:
**nf-params.json**:
```json
{
…
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## Check Documentation
I have checked the following places for your error:
- [x] [nf-core website: troubleshooting](https://nf-co.re/usage/troubleshooting)
- [x] [nf-core/bactmap pipeline d…