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I would like to submit a term request for the technique "mass spectrometry imaging" (MSI).
This technique ([wikipedia description](https://en.wikipedia.org/wiki/Mass_spectrometry_imaging)) is in es…
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Hi all,
I made a pull request with three exemplary annotations for MSI data to start a discussion: https://github.com/bigbio/proteomics-metadata-standard/pull/450
Here are some thoughts about t…
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Sparse array could be both computational and space-efficient when storing mask images. I wonder if it's possible to support sparse array in NGFF spec.
Just for reference scverse/spatialdata#691
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## Feedback
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Requests for text updates:
Under HuBMAP Assays, CODEX should probably be "CODEX Immunofluoresce…
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So this is quite unfortunate. Roughly every time it runs, it creates some duplicates.
```
$ bash no-dupes.sh
# Checking eu
Error! Duplicates!
4 "/Metabolomics/Msi analyte distribution/DO…
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The MC2 Center data model does not currently enable assay-specific metadata to be recorded. Adding these models is a critical part of supporting data sharing and reuse. Potential models to add were or…
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Many papers on mass-spectrometry based proteomics have shown the use of deep learning for intensity prediction, combining scores across search algorithms, retention time, collision corss section predi…
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Currently, it is not possible to convert Mass Spectrometry Imaging data obtained directly from a Bruker MALDI-TOF instrument. First, one has to export the data to multiple `fid` subdirectories through…
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Provide trainings with details about the algorithms of the main analysis to help user really understand what is happening .
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I was trying to use the MS-imaging Viewer to open the imzml data which can be opened in SCILS.
At the beginning,"open imzml" and "loading data" displayed normally,but after that,nothing happended.
T…