galaxyproject ephemeris issues

galaxyproject / ephemeris

Library for managing Galaxy plugins - tools, index data, and workflows.

https://ephemeris.readthedocs.org/

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issues

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`shed_tools` add exit code

#218 bernt-matthias opened 1 month ago
0
`shed-tools` does not fail on installation errors

#217 bernt-matthias opened 1 month ago
0
`shed-tools` error when called without arguments

#216 bernt-matthias opened 1 month ago
0
`get-tool-list` revisions order changes and revision names would be nice

#215 microfuge opened 2 months ago
0
use galaxy-tool-test functions for shed-tools test

#214 cat-bro opened 4 months ago
0
Dm parameters

#213 mvdbeek opened 5 months ago
0
Use None default value where items are optional

#212 mvdbeek closed 5 months ago
0
Refactor build tracking

#211 mvdbeek opened 5 months ago
1
Add now mandatory readthedocs config file

#210 nsoranzo closed 6 months ago
0
Add black, ruff, isort and mypy

#209 mvdbeek closed 6 months ago
0
Fix CI tests

#208 mvdbeek closed 6 months ago
0
Failed to build future for https://training.galaxyproject.org/training-material/topics/admin/tutorials/tool-management/tutorial.html#hands-on-installing-ephemeris-in-a-python-virtual-environment

#207 j34ni closed 7 months ago
4
Provide template for tool_panel_section_label in workflow-to-tool or in a different tool

#206 lldelisle opened 7 months ago
1
Add flag to skip verification of SSL certificate

#205 tflowers15 opened 9 months ago
0
add a section control when installing tools

#204 pimarin opened 11 months ago
0
option to remove a tool

#203 pimarin opened 11 months ago
0
Try to update test instance

#202 jmchilton closed 5 months ago
2
Enhancements to the IDC scripts

#201 jmchilton closed 5 months ago
0
Script to split genomes.yml for IDC

#200 jmchilton closed 5 months ago
2
Juno persona chart calculation is missing

#199 gokhantahil opened 1 year ago
0
Docs don't seem to be updated for latest release?

#198 hexylena opened 1 year ago
0
Merge `shed-tools test` and `galaxy-tool-test` functionality

#197 natefoo opened 1 year ago
0
Remove folder id from get_folders function call in setup-data-libraries

#196 sanjaysrikakulam closed 1 year ago
0
Standardize CLI commands on - instead of _

#195 hexylena closed 1 year ago
2
Add data_manager_mode argument fort IDC use

#194 mvdbeek closed 5 months ago
1
Add partial type annotations

#193 mvdbeek closed 1 year ago
0
Move commands to subcommands of a single `ephemeris` command

#192 natefoo opened 1 year ago
0
Prefer dashes instead of underscores in flags

#191 natefoo closed 1 year ago
2
Rename configuration option removed in tox 4.0

#190 nsoranzo closed 1 year ago
0
Preprocessing Layer for Run Data Managers

#189 jmchilton opened 1 year ago
1
Allow shed-tools to consume run_data_managers.yaml

#188 jmchilton opened 1 year ago
0
Set Library Permissions

#187 mira-miracoli closed 1 year ago
10
New section creation is broken

#186 natefoo closed 5 months ago
8
Install local tools

#185 bvalot closed 2 years ago
1
including --name but not --owner in shed-tools test results in testing all the tools

#184 hexylena opened 2 years ago
0
setup-data-library should have flag/option for linking the data rather than copying

#183 hexylena opened 2 years ago
2
PyYAML load() function requires Loader argument for new release 6.0

#182 loraine-gueguen opened 2 years ago
0
Fix precedence of commandline options and yaml options

#181 mvdbeek opened 2 years ago
1
Global install_resolver_dependencies: false in yaml file does not work

#180 mvdbeek opened 2 years ago
0
Stripping the version from the tool_id (change in 0.10.7) breaks tool testing

#179 cat-bro closed 2 years ago
1
Optionally update workflows on the server when tools are updated

#178 simonbray opened 2 years ago
0
create a repo template for Galaxy instance toolkit management

#177 martenson opened 3 years ago
0
Prepare 0.10.7 release

#176 mvdbeek closed 3 years ago
0
use class Indenter to fix wrong indentation in yaml output

#175 drosofff opened 3 years ago
0
Parallellized tool installation.

#174 rhpvorderman opened 3 years ago
2
Add option to `shed-tools test` for specifying a history name

#173 natefoo closed 3 years ago
0
Simplify tox.ini, base testing on galaxy-compose

#172 rhpvorderman opened 3 years ago
1
delete the extra random sleep lines from sleep.py

#171 cat-bro closed 3 years ago
2
workflow-to-tools: get tools from subworkflows

#170 cat-bro closed 3 years ago
1
Add shed-tools test options

#169 selten opened 3 years ago
0