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My JPP docker setup stopped working a couple weeks ago. It seems to be related to a character in the JuiceBox ID that the box is sending...although I haven't changed anything.
This appears to be di…
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The good news is that setting the new image for the juicebox_commands branch seemed to work. Also, most of the read values I had before seem to be working. With the EXPERIMENTAL set to true, I see t…
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I was running juicepassproxy successfully 2/24-7/24, harvesting data for HA, but in July started getting connection refused from telnet.
```
Trying 10.26.20.33...
telnet: connect to address 10.26.2…
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Dear Authors,
Thank you for developing such a valuable tool. I am currently using Juicer Tools for my de novo vertebrate genome assembly. After executing the following command:
java -jar -Xmx100G …
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I'm seeing the following errors in the log:
```
2024-10-05 09:40:53 DEBUG [juicebox_mqtthandler] Errors in last 60 min: 1
2024-10-05 09:40:53 WARNING [juicebox_mqtthandler] Can't update att…
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## User Story
>AS a website user
>I want add to visualise Hi-C heat maps
>So that it is easy to see how contiguous fragments of chromosomes are assigned
## Acceptance Criteria
>Given I have a datas…
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Dear Teacher Zeng：
I use the Run HapHiC scaffolding pipeline for building pseudomolecules，My script is as follows：
~/HapHiC/haphic pipeline \
~/Musa_analysis/06_polish/01_rundir/genome.nextpolish.f…
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A site I am working on would benefit from an image gallery module such as Juicebox, so I am porting the Drupal project with a view to using the Juicebox-Lite javascript library.
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Dear YaHS Developers and Users,
For large genomes, the .assembly and .hic files generated by YaHS are not fully compatible with Juicebox. Manually setting the scale factor in Juicebox may be necess…
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Hi, I am creating a hic file with 1.7 billion reads to 50 bp res map, but the addnorm always failed in the last step. How could this be resolved? I requested a google cloud server with 700gb memory an…