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For example: https://github.com/vgteam/vg#mapping
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If your graph is large, you want to use vg index to store the graph and vg map to align reads. vg map implements a kmer based seed and extend ali…
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I am running the latest version of Mummer (4.0.0beta2), which I installed by Anaconda. Here is a test case where there are three exact matches in the three reference sequences, and mummer outputs only…
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ideally we can generate example yaml files for the CLI from the CLI, that can then be customised then used
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**##This is how my installation looks like:**
manojprasad@mp103:~/3_softwares_installed/mummer-4.0.0beta2$ ls -l
total 88664
-rw-r--r-- 1 manojprasad manojprasad 43542 Oct 14 2017 aclocal.m4
-…
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In an attempt to use vg for full vertebrate assemblies, we are trying to produce a graph that contains the zebrafish reference genome (Tue) plus alignments of two distinct haplotype scaffolds from a z…
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Add functions which transcode even with the input is invalid, by replacing invalid character sequences with a replacement character.
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# Motivation
This is to allow `admin` users to alter the permission for other non-admin users to be either:
- `user` - An ordinary user
- `mod` - A user with enhanced powers
- `admin` A user …
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How else can one preprocess data:
other approaches to thermometer encoding / random permutation? They could improve accuracy.
- Read literature on WNN techniques which were considered [1 day]
- Outli…
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Given the recent hickup described in issue #2423 I'd like to open a discussion and maybe make some improvements based on OC NODE specific circumstances.
On OCRO I have NUTS data. Editing a cache a…
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Hi,
I ran q2-dbbact using qiime2-2021.4 and got the following error
Plugin error from dbbact: Duplicate observation IDs
The content of the log file is following
trimming primers if needed
…