mummer4 mummer issues - Githubissues

mummer4 / mummer

Mummer alignment tool

Artistic License 2.0

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issues

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Please consider renaming bin/annotate since it conflicts with other packages

#217 yurivict opened 3 weeks ago
0
devel branch fails to build:error: variable 'Offset' set but not used [-Werror,-Wunused-but-set-variable]

#216 yurivict opened 3 weeks ago
1
Compiling on Fedora 40 with gcc 14.2.1

#215 kdorman opened 2 months ago
0
Nucmer issue: taking forever or alignment very fragmented

#214 BioJules opened 4 months ago
2
mummerplot chromosome is not sorted correctly

#213 JeanQ2020 opened 5 months ago
0
mummerplot defined(%hash) issue

#212 sheraghty opened 5 months ago
0
mummer4_Inappropriate ioctl for device

#211 hjt1129 opened 6 months ago
0
defective out.sam fomat?

#210 yaximik closed 6 months ago
1
How to install the develop branch, I get a "no makefile" error

#209 margaretc-ho closed 7 months ago
3
terminate called after throwing an instance of 'std::length_error

#208 fka21 opened 8 months ago
1
output .1coord header

#207 adriludwig closed 8 months ago
0
Mummerplot fails with some .mum files due to whitespace issue

#206 margaretc-ho closed 8 months ago
1
wrong size chromosome estimate

#205 PavelEG closed 9 months ago
1
Cannot compile (Fedora 39): make[1]: *** [Makefile:2087: src/essaMEM/sparseSA.lo] Error 1

#204 MrTomRod closed 9 months ago
4
Added #include <cstdint> to allow compiling with newer versions of gcc

#203 tbenavi1 closed 9 months ago
2
nucmer "First character must be a '>'"

#202 juliadouglasf closed 1 year ago
1
mummerplot command shows '-t' for both 'title' and 'terminal'

#201 splaisan closed 10 months ago
4
stdin for show-snps + autotools version in Dependencies

#200 Hajin-Jeon opened 1 year ago
1
Patch 48bit_index.hpp to prevent gcc13 build errors

#199 A-N-Other closed 9 months ago
1
delta-filter no error and no results

#198 15132522078 opened 1 year ago
3
`dnadiff` throws an error

#197 MahshidF1991 opened 1 year ago
0
ERROR: Could not parse delta file, shipai.filter.delta error no: 400

#196 Fei5536 opened 1 year ago
0
Nucmer can only call ten threads

#195 mrwangyz opened 1 year ago
2
ERROR: Could not parse delta file, out.delta error no: 002

#194 ylevmirom closed 1 year ago
1
Manually ordering contigs/chromosomes with mummerplot

#193 kcl58759 opened 1 year ago
2
Failed to make on ubuntu 22.04

#192 jhcuarta opened 2 years ago
1
nucmer won't run

#191 peflanag opened 2 years ago
2
Mummerplot kills Docker

#190 joshfactorial opened 2 years ago
1
Specifying a temp dir? (for show-tiling, or in general)

#189 fishercera opened 2 years ago
0
Is it possible to count the number of re-arrangement between two genome using the output of nucmer ?

#188 Karimi-81 opened 2 years ago
0
Horizontal lines near the end of ech chromosome

#187 bd904 opened 2 years ago
0
is it suitable for the very big genome?

#186 AlisaGU opened 2 years ago
0
macOS Monterey and mummer4

#185 bmillerlab opened 2 years ago
0
how to use the delta2vcf tool

#184 hcph opened 2 years ago
0
error running mummerplot

#183 emmannaemeka opened 2 years ago
1
How can I get the align with the specified coordinates?

#182 CAShuangchao opened 2 years ago
0
Failed to make a SWIG binding installation from mummer-4.0.0beta2

#181 alihamraoui closed 2 years ago
4
Mummer 4.0 on conda

#180 yihualiued opened 2 years ago
1
gnuplot: error while loading shared libraries: libjpeg.so.8:

#179 marco91sol opened 2 years ago
0
question of show-snps

#178 zjwang6 opened 2 years ago
0
dnadiff output questions

#177 pc395 opened 3 years ago
0
More than one alignment on the same path

#176 rsharris opened 3 years ago
0
seeking clarification on perl5 requirement

#175 rsharris opened 3 years ago
0
WARNING: Unable to run 'false out.gp', Inappropriate ioctl for device

#174 bauder97 opened 3 years ago
1
How should I understande the "AlignedBases" from the dnadiff.report file

#173 fsq9451 opened 3 years ago
0
The problem about make

#172 wbc569668815 opened 3 years ago
1
snp format

#171 liufy11 opened 3 years ago
0
DOC fix installing commands for ubuntu

#170 celiosantosjr closed 9 months ago
1
Mummerplot in MUMMER/4.0.0beta2 default colors

#169 gitcruz closed 3 years ago
0
show-snps can't handle whitespace in delta file path

#168 not-a-feature opened 3 years ago
0