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mummer4
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mummer
Mummer alignment tool
Artistic License 2.0
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mummerplot chromosome is not sorted correctly
#213
JeanQ2020
opened
2 weeks ago
0
mummerplot defined(%hash) issue
#212
sheraghty
opened
1 month ago
0
mummer4_Inappropriate ioctl for device
#211
hjt1129
opened
1 month ago
0
defective out.sam fomat?
#210
yaximik
closed
2 months ago
1
How to install the develop branch, I get a "no makefile" error
#209
margaretc-ho
closed
3 months ago
3
terminate called after throwing an instance of 'std::length_error
#208
fka21
opened
3 months ago
0
output .1coord header
#207
adriludwig
closed
3 months ago
0
Mummerplot fails with some .mum files due to whitespace issue
#206
margaretc-ho
closed
3 months ago
1
wrong size chromosome estimate
#205
PavelEG
closed
4 months ago
1
Cannot compile (Fedora 39): make[1]: *** [Makefile:2087: src/essaMEM/sparseSA.lo] Error 1
#204
MrTomRod
closed
5 months ago
4
Added #include <cstdint> to allow compiling with newer versions of gcc
#203
tbenavi1
closed
5 months ago
2
nucmer "First character must be a '>'"
#202
juliadouglasf
closed
9 months ago
1
mummerplot command shows '-t' for both 'title' and 'terminal'
#201
splaisan
closed
5 months ago
4
stdin for show-snps + autotools version in Dependencies
#200
Hajin-Jeon
opened
11 months ago
1
Patch 48bit_index.hpp to prevent gcc13 build errors
#199
A-N-Other
closed
5 months ago
1
delta-filter no error and no results
#198
15132522078
opened
1 year ago
3
`dnadiff` throws an error
#197
MahshidF1991
opened
1 year ago
0
ERROR: Could not parse delta file, shipai.filter.delta error no: 400
#196
Fei5536
opened
1 year ago
0
Nucmer can only call ten threads
#195
mrwangyz
opened
1 year ago
2
ERROR: Could not parse delta file, out.delta error no: 002
#194
ylevmirom
closed
1 year ago
1
Manually ordering contigs/chromosomes with mummerplot
#193
kcl58759
opened
1 year ago
2
Failed to make on ubuntu 22.04
#192
jhcuarta
opened
1 year ago
1
nucmer won't run
#191
peflanag
opened
1 year ago
2
Mummerplot kills Docker
#190
joshfactorial
opened
1 year ago
1
Specifying a temp dir? (for show-tiling, or in general)
#189
fishercera
opened
1 year ago
0
Is it possible to count the number of re-arrangement between two genome using the output of nucmer ?
#188
Karimi-81
opened
1 year ago
0
Horizontal lines near the end of ech chromosome
#187
bd904
opened
2 years ago
0
is it suitable for the very big genome?
#186
AlisaGU
opened
2 years ago
0
macOS Monterey and mummer4
#185
bmillerlab
opened
2 years ago
0
how to use the delta2vcf tool
#184
hcph
opened
2 years ago
0
error running mummerplot
#183
emmannaemeka
opened
2 years ago
1
How can I get the align with the specified coordinates?
#182
CAShuangchao
opened
2 years ago
0
Failed to make a SWIG binding installation from mummer-4.0.0beta2
#181
alihamraoui
closed
2 years ago
4
Mummer 4.0 on conda
#180
yihualiued
opened
2 years ago
1
gnuplot: error while loading shared libraries: libjpeg.so.8:
#179
marco91sol
opened
2 years ago
0
question of show-snps
#178
zjwang6
opened
2 years ago
0
dnadiff output questions
#177
pc395
opened
2 years ago
0
More than one alignment on the same path
#176
rsharris
opened
2 years ago
0
seeking clarification on perl5 requirement
#175
rsharris
opened
2 years ago
0
WARNING: Unable to run 'false out.gp', Inappropriate ioctl for device
#174
bauder97
opened
2 years ago
1
How should I understande the "AlignedBases" from the dnadiff.report file
#173
fsq9451
opened
2 years ago
0
The problem about make
#172
wbc569668815
opened
2 years ago
1
snp format
#171
liufy11
opened
2 years ago
0
DOC fix installing commands for ubuntu
#170
celiosantosjr
closed
5 months ago
1
Mummerplot in MUMMER/4.0.0beta2 default colors
#169
gitcruz
closed
2 years ago
0
show-snps can't handle whitespace in delta file path
#168
not-a-feature
opened
2 years ago
0
What exactly is a cluster? My promer output is too small and trying to troubleshoot
#167
SheepwormJM
opened
2 years ago
0
What is meant by the number of "sampled suffix positions"?
#166
krinsman
opened
2 years ago
0
The meaning of "--maxmatch" and "--mum"
#165
Nonodayo
opened
3 years ago
1
An error is reported when run-mummer1 and run-mummer3 are executed.
#164
Tom-python0121
opened
3 years ago
0
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