-
We use standalone locusZoom tool to generate the regional association plots at each locus of pQTL signals.
-
The following KioskQuery definition:
```
image_load:
name: 'Image load distribution'
description: 'Analyze how the overall image load distributes among units, record types and years'
…
-
After the previous error had been resolved, the new version has been downloaded. Unfortunately, the following issue came up in running the meta-analysis:
Calculating summary statistics
Saving result…
-
I have installed bakta using the following command:
```
mamba create -n bakta -c conda-forge -c bioconda bakta
```
And the database was downloaded using the following command:
```
bakta_db downl…
-
This is because, on the first line of the gbf file, sometimes there is no space between the "chunk" number and the length of the sequence, altering the real sequence length:
E.g:
LOCUS my…
-
Placeholder issue for now...
The current handling of fixations is not ideal:
* it leads to modeling errors
* the pruning policy stuff affects efficiency of fitness calculations.
Any fixes wi…
-
A user wrote in asking about the allele numbers (AN) for this [variant](https://gnomad.broadinstitute.org/variant/3-10052405-G-A?dataset=gnomad_r4). I realized from their question that the non-UKB A…
ch-kr updated
4 months ago
-
We moved to rankscore, but raw scores are used in ACMGv4 in PP3_supporting
Check out if any others are used
We should also run eg REVEL as a tool instead of dbNSFP
If not on the short variants then…
-
Here's a rough draft of a db schema for G2P associations (in normal form). Currently, it only handles univariate associations.
- David Heckerman, Christoph Lippert, Chris Widmer
Study id (unique g…
-
Please leave suggestions for studies using a *crossover design*.
## Books
For this section, see the following texts:
* Senn (2002, [https://doi.org/10.1002/0470854596](https://doi.org/10.1002/0…