-
Hi, I couldn't find any software for methylation calling. Do you have any suggestions?
-
Good day,
I would like to perform Differential methylation scoring.
Is there a way to identify the number of hypo and/or hyper differentially methylated regions in introns, exons, promoters, TSS, 5′…
-
sample info : https://github.com/sr320/ceabigr/issues/111#issuecomment-2078062169
-
Dear m6A developers.
I wonder if you can advise on the best statistics to perform a differential m6A abundance analysis between two sample groups.
I've already successfully run m6anet v2.1 on my O…
-
### Need
As a user, I want to be able to visualise methylation. Although I'm probably not sure how.
One way would be to visualise it in IGV, either with bedMethyl or bedgraph (converted to bigW…
-
sr320 updated
3 hours ago
-
**Is your feature request related to a problem? Please describe.**
Implement an age clock measurement method for DNA methylation arrays
**Describe the solution you'd like**
Implement preprocessin…
-
Hi,
I have developed a package for methylation arrays / beta values (https://github.com/brj0/mepylome) and I would like to apply batch correction, similar to the functionality provided by the champ…
-
Hi,
There is a problem with representation of methylation: 2-color system for 5mC (as well as any other system) displays all called 5C the same color. It is either all blue, all red, or all pink, but…
-
Hi @ArtRand,
Running the following:
```
modkit dmr multi
-s methylation_10/brevundimonas_r-contigs/barcode01.bed.gz top
-s methylation_10/brevundimonas_r-contigs/barcode02.bed.gz middle …