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### Errors in docs/_RDM-Process/14-data-organization.md
* [ERR] [`https://www.adelaide.edu.au/microscopy/facilities-services/data-access#how-do-i-organise-my-microscopy-files`](https://…
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Hi @haesleinhuepf, it was interesting that I just found in our database, we have two data sources which names are the same: "FAIR data handling for microscopy: Structured metadata annotation in OMERO"…
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## 🚀 Feature
"Pointilist" data such as obtained through Localization Microscopy (STORM, PALM, and friends) can consist of million of 3D localizations, and has its own visualization challenges. It wo…
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BIDS accepts ome-zarr data in its microscopy extension, but not in its main MRI-related specification.
In most cases, MRI volumes are small enough that chunked formats do not make sense, but MRIs…
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* Name of dataset: Photoacoustic Microscopy Dataset
* URL of dataset: [https://zenodo.org/record/4042171](https://zenodo.org/record/4042171)
* License of dataset: CC BY 4.0
* Short description of d…
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Hi Everyone,
We have a question about microscopy data, apologies if this is the wrong place for this discussion (if so it would be much appreciated if someone could point us to the correct place).
…
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**AIMS**
- Load BIDS microscopy data for training and inference
- Remove “bids_neuropoly” dependency and replace by “pybids”
**Preliminary questions**
- Use BIDS (following #301)?
- Alternative…
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For pathology use cases, it is crucial to be able to download only single levels (and safe the effort of downloading a huge amount of data not actually needed).
I think this could be added in the …
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**AIMS**
- Adapt, if needed, the training procedure one the microscopy data is loaded
- Retrain ADS models (SEM, TEM and OM)
**Preliminary questions**
- Deal with multiclass (axon/myelin/backgro…
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**AIMS**
- Reconstruct images from 2D patches
- Run inference on microscopy data
**Preliminary questions**
- Deal with patch overlap for inference
**UPDATE**
- The loading of microscopy data…