-
Hi Great tool thanks for maintaining it.
i have a question that relates to the lack of mitochondrial genome encoded genes and their corresponding ontologies.
In the following code:
```
hgnc
-
Dear authors,
thanks for developing this very useful package.
I am currently analyzing a set of 33 samples QCed same way with GeneNMF default parameters but i get many meta-programs related to mito…
-
- [ ] More details for the 'plot_seurat_clustree' function.
- [ ] Minor detail : need a roxygen skeleton to check_reduction (seurat)
- [ ] Is it normal that there are no function in utils.R?
- [ ]…
-
Dear dpcook,
just a tiny "issue" - you used the human regexp "MT-" for detecting mitochondrial genes. Use "mt-" instead and your plot showing mitochondrial gene distribution will no longer be flat.…
-
Is there no mitochondrial chromosome or mitochondrial gene annotation in [chm13v2.0.fa.gz](https://s3-us-west-2.amazonaws.com/human-pangenomics/T2T/CHM13/assemblies/analysis_set/chm13v2.0.fa.gz) and […
-
**Describe the bug**
Thank you for creating EnrichR! I have noticed that when adding human mitochondrial genes they do not generate gene ontologies, for example, GO:0031966. Could you please include …
-
Dear Velocyto.R developer,
I have a technique question and would like to ask you. I checked mitochondrial genes in the loom file using Velocyto.R and noticed that they all have 0 expression (code b…
-
@Antonialock 's first GO-CAM!
The model
http://noctua.geneontology.org/workbench/noctua-visual-pathway-editor/?model_id=gomodel%3A67086be200000363
The genes
https://www.pombase.org/results…
-
Hi @kozo2 @jwokaty
When trying to search a reaction in "genes" database, I get the following error. Do you know a workaround this?
`KEEGREST version: 1.45.1`
```r
temp
-
Hello,
Thank you for creating this great tool. I have successfully run read2tree using marker genes downloaded from OMA browser and my own data, which seems really great.
However, I found some pro…