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## Overview
There are some cases where the `mondo` repo is doing `wget`s to individual source repositories. We should refactor the pipeline so that it always looks like this: `mondo` --> `mondo-inges…
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## Overview
This is minor because this is not likely to happen very often, and when it does happen, I'm not sure how much of a major issue it would be. But it could create very confusing scenarios if…
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**Mondo term (ID and Label)**
MONDO:0035454 B-cell immunodeficiency-limb anomaly-urogenital malformation syndrome
**Reason for deprecation**
ORDO term is exact match to OMIM 609296 see http://www…
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**Mondo term (ID and Label)**
MONDO:0035474 PIEZO1-related generalized lymphatic dysplasia with non-immune hydrops fetalis
**Reason for deprecation**
Appears to be the same concept as OMIM:616843…
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## Overview
I had an ODK repository with spaces in the path (https://github.com/monarch-initiative/mondo-ingest/issues/545), and this resulted in an error when using `run.sh`.
## The error
`docke…
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## Overview
We added a PR (https://github.com/monarch-initiative/mondo-ingest/pull/551#discussion_r1626754121), but it does not ensure that _every goal_ that has the `mondo` clone as a downstream dep…
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**Mondo term (ID and Label)**
MONDO:0035117 PUM1-associated developmental disability-ataxia-seizure syndrome
**Reason for deprecation**
Orpha is exact match to OMIM, per ORDO: http://www.orpha.ne…
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## Overview
`mondo-ingest` is currently installing `bioregistry`. `match-mondo-sources-all-lexical.py` depends on it. However, whatever functionality being used by that package should also be found i…
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## Overview
There is an OMIM [release artefact](https://github.com/monarch-initiative/omim/releases) `mondo_genes.csv`. It needs to be changed into a ROBOT template.
## Sub-tasks
### I. `omim` @j…
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This issue is derived from reviewing [this PR](https://github.com/monarch-initiative/mondo/pull/7795)
It looks like the x-ref are updated such that, if they are mapping to an obsolete MONDO term, t…