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Hello,
I was wondering what is the best approach to replicate significant SNPs from a MTAG analysis.
Say I conduct MTAG on disease1 and disease2 and I am interested in disease1-specific results…
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Dear professor,
We conducted an analysis using MTAG. Overall, the correlation between the effect sizes from MTAG and the original GWAS is quite good, r=0.67; however, we found that the effect sizes o…
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Hello, could you please explain why this situation is occurring? The maxFDR could not run at the end, and the following error occurred. Is it because the GWAS of Primary Ovarian Failure has too low po…
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I've followed previous advice of running the single trait MTAG to work out the factor that the MTAG beta's and SE's need to be multiplied by to compare to the GWAS results.
The mean factor (MTAG_beta…
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We don't yet include MTAG (https://github.com/JonJala/mtag) in our containers, it's handy tool to have.
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Explicit in place
```Python
@router.post(
"/user",
gw = Gateway(permission="service:user:add", group="User" title="Add")
)
async def add_user():
return {}
```
Explicit, inherit …
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Dear professor,
I came across the problem when runing 10 trait, and the err log file was shown as below. I also tried to exlcude all variants containing "AGAAGA" genotype, it stiil gave the same err…
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Hi,
Thanks for the mtag software!
I finished the mtag run and tried to get maxFDR in a separate run with --skip_mtag option. My command is " python ~/work_dir/software_install/mtag/mtag.py --skip_m…
arkyl updated
6 months ago
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Hello,
I am interested in the command “--incld_ambig_snps”, when I do not use this command MTAG removes over 600,000 SNPs out of 4,000,000 SNPs. I have tried MTAG both ways (with and without the “…
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### Discussed in https://github.com/scalameta/metals/discussions/6730
Originally posted by **LeUser111** August 28, 2024
Hi there,
I'm making massive use of access modifiers in combination …