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CoMorMent-Containers
https://www.comorment.uio.no
GNU General Public License v3.0
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Run unit tests during Docker build procedure
#277
espenhgn
opened
1 week ago
0
Test containers during build
#276
espenhgn
opened
1 week ago
0
Missing tools/packages to Python3/R containers
#275
espenhgn
opened
1 month ago
0
`python3`: add missing packages
#274
espenhgn
closed
1 month ago
0
`python3`: add missing packages
#273
espenhgn
closed
1 month ago
0
buggered ldak download
#272
espenhgn
closed
1 month ago
0
buggered ldak download
#271
espenhgn
closed
1 month ago
0
`python3; r`: add missing modules
#270
espenhgn
closed
1 month ago
0
Spawn container instances in the background
#269
espenhgn
opened
1 month ago
0
fix `GLIBCXX_3.4.30 not found`; conda env; fix broken tests
#268
espenhgn
closed
1 month ago
0
Python code with `from scipy import stats` fails w. `GLIBCXX_3.4.30 not found`
#267
espenhgn
closed
1 month ago
0
bump wget version
#266
espenhgn
closed
3 months ago
0
Update gSEM Git SHA
#265
juuf
closed
3 months ago
0
search and replace `r` fix
#264
espenhgn
closed
3 months ago
0
search and replace `r`
#263
espenhgn
closed
3 months ago
0
Fixed wrong Docker build target
#262
espenhgn
closed
3 months ago
0
Wrong Docker build target
#261
espenhgn
closed
3 months ago
0
Add container build/push actions
#260
espenhgn
closed
3 months ago
0
`ldpred2.R`: add argument to drop SNPs.
#259
espenhgn
opened
4 months ago
1
Subscript out of bound
#258
KirakiraZLY
opened
5 months ago
4
`LDpred2`: LD estimation with physical position instead of genetic distance
#257
deepchocolate
opened
5 months ago
1
`singularity`: push built container to https://ghcr.io
#256
espenhgn
closed
3 months ago
0
`LDpred2`: Crash with characters and integers in chromosome column
#255
espenhgn
opened
5 months ago
1
Update run_ldpred2_slurm.job
#254
espenhgn
closed
5 months ago
0
Revert "Build container image `hello:latest` using build action "
#253
espenhgn
closed
5 months ago
0
Build container image `hello:latest` using build action
#252
espenhgn
closed
5 months ago
0
Push to Docker registries
#251
espenhgn
closed
5 months ago
0
`gwas.sif`: build regenie with `HAS_BOOST_IOSTREAM=1`
#250
espenhgn
closed
5 months ago
1
`gwas.sif`: build regenie with `HAS_BOOST_IOSTREAM=1`
#249
espenhgn
closed
5 months ago
0
`r.sif`: Rstudio-server docs
#248
espenhgn
closed
6 months ago
0
`r.sif`: Rstudio-server docs
#247
espenhgn
closed
6 months ago
0
add support for additional options in gwas.py
#246
ttfiliz
closed
3 months ago
0
Allow additional options for gwas.py
#245
ttfiliz
closed
3 months ago
0
add --extract and --exclude options to filter snps in gwas.py
#244
ttfiliz
closed
6 months ago
1
citation stuff
#243
espenhgn
closed
6 months ago
0
references
#242
espenhgn
closed
6 months ago
0
genopred Dockerfile
#241
ofrei
opened
6 months ago
4
Documentation updates
#240
espenhgn
closed
6 months ago
0
Deprecate Saige
#239
ttfiliz
closed
6 months ago
0
`ldpred2.R`: bus error
#238
espenhgn
closed
6 months ago
4
Regenie throws error for step1 if there are more than 1M variants
#237
bayramakdeniz
closed
6 months ago
6
`pgs_toolkit`: onesnp example data
#236
espenhgn
closed
6 months ago
0
`CONTRIBUTING` docs lacks "Writing docstrings" instructions
#235
espenhgn
closed
6 months ago
0
`gwas.py`: fixed gwas demo run and IID column position
#234
ttfiliz
closed
7 months ago
0
Updated LDpred2 examples
#233
deepchocolate
closed
7 months ago
8
gwas.py is sensitive to position of IID column in phenotype's dictionary file
#232
ofrei
closed
7 months ago
1
Revised autodocs build
#231
espenhgn
closed
7 months ago
0
GWAS demo run 1 is not working
#230
ttfiliz
closed
7 months ago
1
gwas.py is not working with Saige
#229
ttfiliz
closed
6 months ago
0
Minor changes to documentation + suggestion of TOC
#228
ofrei
closed
7 months ago
0
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