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I have encountered this error:
```
ImportError: cannot import name 'default_motifs' from 'gimmemotifs.motif' (/opt/miniconda3/envs/celloracle/lib/python3.10/site-packages/gimmemotifs/motif/__init__.…
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Hi all,
Thanks for this wonderful tool!
We're trying hard to install pycistopic using pip in our cluster (NYGC), but we keep hitting all sorts of errors. We managed to run pySCENIC with singular…
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I have been using ember motifs for the network simulations with ~10K nodes using firefly NIC and merlin router. Now I am interested in simulating a complete HPC system by integrating the compute and m…
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Hello,
I am following [this](https://morris-lab.github.io/CellOracle.documentation/notebooks/02_motif_scan/02_atac_peaks_to_TFinfo_with_celloracle_20200801.html) tutorial to obtain a base GRN, with…
acv21 updated
1 month ago
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Paper: https://www.nature.com/articles/s41586-022-05688-9
Abstract:
Cell identity is governed by the complex regulation of gene expression, represented as gene-regulatory networks[1]. Here we use ge…
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I've been seeing my `pyscenic ctx` gets terminated in the middle of the run. My mystery is that it doesn't throw any error message as shown below:
```bash
$ singularity shell -B path/to/work…
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I ran the GrnBoost2 algorithm on my bulk transcriptomics data and now want to predict regulon using cisTarget.
My code raised "could not convert string to float: " error.
ADJACENCIES_FNAME = "../i…
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Thank you for the wonderful tool! When I want to make my own GRN, get error. My network can't download ref_genome so
I manual download https://hgdownload.soe.ucsc.edu/goldenPath/mm39/bigZips/mm39.fa…
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Frequency: Every time.
Action:
1: Launch the app.
2: Tap on "START", user will be navigated to "Albums" folder.
3: Tap on "Motif" tab and select two random motifs.
4: Put the device in offline mode a…
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Documentation for this project needs to be updated. Ideally, a lot of this could go into a wiki.
- [x] README - Either flesh out the existing barebones file, or update it with something useful.
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