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Found while running our CI pipeline on this module: https://github.com/TheDeanLab/navigate/blob/develop/test/model/data_sources/test_zarr_data_source.py
The tests work with `pydantic-ome-ngff==0.5.…
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On idr0125-pilot, going to test import of METADATA.ome.xml and then use mkngff to replace the fileset with full NGFF plate mounted on s3.
```
sudo cp idr0125/SQ00015207__2016-04-24T05_39_26-Meas…
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On my local Mac, I created a new conda env and installed just `ome2024-ngff-challenge`, then tried converting the remote sample from https://uk1s3.embassy.ebi.ac.uk/idr/zarr/v0.4/idr0062A/6001240.zarr…
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### Zarr version
3.0.0a1 and v3 branch currently
### Numcodecs version
n/a
### Python Version
3.10 and 3.12
### Operating System
Mac
### Installation
pip install in mamba env.
### Descriptio…
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idr0001 has 192 x 96-Well Plates, 6 acquisitions each.
1 Plate converted [below](https://github.com/IDR/idr-metadata/issues/683#issuecomment-1886903270) is 47 GB.
Approx 4.5 TB in total.
bioformats…
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## Context
Tried importing OME NGFF sample at https://uk1s3.embassy.ebi.ac.uk/idr/zarr/v0.4/idr0101A/13457537.zarr
This has a 'translation' in the datasets coordinateTransformations:
```
"data…
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This question came as a follow-up of the ongoing [OME 2024 challenge](https://github.com/ome/ome2024-ngff-challenge) which aims to generate Zarr datasets largely based on the structure defined in [RFC…
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Sparse array could be both computational and space-efficient when storing mask images. I wonder if it's possible to support sparse array in NGFF spec.
Just for reference scverse/spatialdata#691
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https://www.glencoesoftware.com/products/ngff-converter/