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### What happened?
Thanks for fixing my prior "Could not find a task with ID" issue. My issue has now 'migrated'.
I'm running version 3.4.2 as singularity on my University HPC:
"> singularity pu…
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Trying to install REUnet:
https://github.com/Bigsealion/REUnet/blob/master/install_REUnet.py#L23 pulls from an environment variable `nnUNet_preprocessed`? What is this for?
```
Copy /Users/johnmus…
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i am trying to figure out how to render the image of train model using nnunet to wandb or whatever. please help me.
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Thanks for sharing this code and pretrained weights! It is very helpful to my project.
When I try to run inferencing with provided code, some errors happened, and I spent several hours to solve the…
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Hi,
using the command: nnUNet_compile=True nnUNetv2_predict with options -npp 6 -nps 6. now my GPU memory is occupied only half. As far as I understod, this inference code basically runs sliding-w…
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Hi @TaoZhong11 ,
Thanks for this amazing work!
I encountered an error while running the Docker image with data I obtained from https://fcon_1000.projects.nitrc.org/indi/PRIMEdownloads.html. To t…
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I've been working on MRI segmentation tasks using nnU-Net, and I've noticed that the standard configurations often utilize SGD as the optimizer. While I understand that the choice of optimizer and n…
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Hi there!
I am trying to train a 3d_fullres model, but the patch size, despite maximizing the memory occupied in one of the GPUs, is too small. Hence, I would like to try multi-GPU training but I c…
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@thuhoainguyen We are ready to train the first model. Let's setup first:
Note: Please observe any unexpected error during installing and let me know!
## Setup optimus:
Go to `hnguyen@optimus:/data/…
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In this issue, I detail the exploration of training an nnUNet model.
The code is in branch `plb/new_nnunet`.
The script `nnunet/convert_msd_to_nnunet.py` takes the json file of an MSD dataset and…