MIC-DKFZ nnUNet issues - Githubissues

MIC-DKFZ / nnUNet

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Commands for generating predictions for the validation set

#2613 KZhub3 opened 11 hours ago
0
Question on Running Inference - Gaussian

#2612 jamesgwen opened 1 day ago
0
data augmentation

#2610 jiwonpoong opened 1 day ago
0
Pretrained and continous training

#2609 gogochen07 opened 2 days ago
0
Other data conversion code reported in "nnUnet revisited"

#2608 qimaqi opened 3 days ago
4
RuntimeError: "Some background workers are no longer alive" during nnUNetv2_train Validation

#2607 mtw2156 opened 3 days ago
3
Training with step instead of epoch

#2606 gogochen07 closed 2 days ago
2
version problem

#2605 chengengle opened 3 days ago
0
Model output NaN

#2603 Ordi117 opened 4 days ago
0
How to Aggregate Results from Five-Fold Cross-Validation in nnUNetv2?

#2602 harrymagic098 closed 1 day ago
2
NaN issue during training

#2601 bhaswara opened 5 days ago
0
Encountered: "corrupted size vs. prev_size" error

#2599 Wayyuanyuan opened 1 week ago
0
What are the trends for optimal training results for training losses and validation losses

#2598 gittzb opened 1 week ago
1
crop_to_bbox is no longer used in cropping.py, and not avaiable in latest acvl, will cause import error during running.

#2597 rokeeeto-li closed 6 days ago
2
delete crop_to_bbox

#2596 Kobalt93 closed 1 week ago
1
RuntimeError: One or more background workers are no longer alive.

#2595 MoraRubio closed 6 days ago
2
RuntimeError(f"Could not find a dataset with the ID {dataset_id}. Make sure the requested dataset ID ".

#2594 feng-ye00 opened 1 week ago
0
Problem in prediction: AssertionError: Spacing length should be 3 for 3D images

#2593 luuciaborrego02 opened 1 week ago
0
preprocessing

#2592 liweizhong666 opened 1 week ago
0
Exporting Model as .pth file having dimensions issues

#2591 jamesgwen opened 1 week ago
0
Problem occurs when inputting images above 10 images.

#2590 U-ma-s closed 1 week ago
1
`nnunetv2.inference` crashes on import (`No module named 'blosc2'`) due to buggy `acvl_utils` release

#2589 joshuacwnewton closed 2 days ago
4
Installation issue because of numpy version

#2587 kbrueggi opened 2 weeks ago
0
no validation_raw folder after training

#2586 KeruZheng closed 1 day ago
2
nnUNetv2_plan_and_preprocess stuck at preprocessing (99%)

#2585 johnson111788 opened 2 weeks ago
0
Pseudo DICE and traning/testing losses not improving

#2584 CYH16 opened 2 weeks ago
0
training error (nnunet 1.7.0)

#2583 liweizhong666 closed 2 weeks ago
0
two copies of source code for nnunetv2.training.nnUNetTrainer?

#2582 dancingreindeer opened 2 weeks ago
1
mmap length is greater than file size

#2581 skz0602 closed 2 weeks ago
2
multiple labels modalities

#2580 Ouzuo1 closed 1 day ago
1
Overlapping segmentation using png input and png label

#2579 NaJiwoong opened 2 weeks ago
0
Training the model using self-built 2d data was not successful

#2578 TengfeiHe opened 3 weeks ago
0
Running nnUNet_train 3d_fullres nnUNetTrainerV2 2 0 --npz reports an error!

#2577 SuperLuckyKris opened 3 weeks ago
0
Issues finding the exact file to execute while using command from instruction

#2576 MenghanLiu212 opened 3 weeks ago
0
add FLARE24 challenge contribution

#2575 ykirchhoff opened 3 weeks ago
0
Why adjust num_epochs=500, batch_size=4, but the debug file shows batch_size=2, num_epochs=50, and the model is only trained for 50 epochs

#2574 joey-AI-medical-learning opened 3 weeks ago
0
Can't initialize NVML

#2573 lannight93816 closed 1 week ago
0
why different datasets have the same training runtime(RT)?

#2572 sysu18364010 opened 3 weeks ago
1
Error when using DDP and deep_supervision=False

#2571 XwK-P opened 3 weeks ago
0
Merging segmentations

#2570 Mai-CS closed 2 weeks ago
2
Data Augmentation using the batchgenerators-framework in nnUNet

#2568 sabinevater opened 3 weeks ago
0
Ignore Labels for 2D images

#2567 FabianHoerst opened 4 weeks ago
0
Has anyone done comparison of nnUNet with foundational models?

#2566 karllandheer closed 6 days ago
1
Fixed typo

#2565 ajinkya-kulkarni opened 4 weeks ago
0
Use real latest checkpoint in training

#2564 fitzjalen opened 1 month ago
0
continue training from checkpoint_best.pth instead of checkpoint_latest.pth

#2563 romainVala opened 1 month ago
5
When data enhancement such as resize is performed after resample to target sapcing, does it not affect spacing?

#2562 STHxiao opened 1 month ago
0
Region-based training vs. Label training comparison

#2561 strasserpatrick closed 2 weeks ago
2
pretraining and finetuning documentation: nnUNetv2_preprocess step fails

#2560 snorthman opened 1 month ago
0
how to make sure to run consolidate_folds in the output folder of the model first!

#2559 kid-10590 opened 1 month ago
1