MIC-DKFZ nnUNet issues - Githubissues

MIC-DKFZ / nnUNet

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nnunetv2_plan_and_preprocess

#2472 SunKai-Tsinghua opened 1 month ago
2
autoPET II inference

#2471 kndahl closed 1 week ago
1
Stuck at the beginning of training

#2470 Wind-177 opened 1 month ago
3
Epoch time in training double that of benchmarking

#2469 sabinevater closed 1 week ago
3
Ensemble

#2468 Body123 opened 1 month ago
2
about v1 how to inference in cpu?

#2467 qiaoqiangPro opened 1 month ago
0
is their other way to make the prediction with Adding batch size

#2466 Body123 opened 1 month ago
1
slow training (learning) of new nnUNetv2

#2465 mehrnia opened 1 month ago
0
LABEL IN DATASET.JSON WHEN I USE SPIDER DATASET

#2464 lamtaynha1234 opened 1 month ago
0
How can I train a nnUnet to predict for 2d slices?

#2463 Chuyun-Shen opened 1 month ago
0
Fix `deep_supervision` parameter doesn't work in `nnunetv2.utilities.get_network_from_plans`

#2462 AIboy996 closed 1 week ago
7
Run inference in a pretrained model from outside nnUNet, with only one modality from the dataset

#2461 SergioRodLla opened 1 month ago
0
about data augmentation techniques

#2460 Cestovatels opened 1 month ago
0
configuration after early stopping with nnunetv2

#2459 bkonk closed 1 month ago
2
Disable multilabel segmentation in nnUNetv2_predict

#2458 MattAWard closed 1 month ago
9
error during training

#2457 Gingerwtw closed 1 month ago
5
data_loader_2d error during training

#2456 satara closed 1 month ago
12
I want to create a python class for inference

#2455 Body123 opened 1 month ago
1
Using my new trained model in a python file

#2454 tedi14 opened 1 month ago
2
Bus Error During nnUNet Inference in Docker

#2452 mtoan65 closed 3 weeks ago
4
Setting Patch Size in Server Training

#2450 bhaswara closed 1 month ago
1
I did the baseline training with nnunet and run inference on my data. During this process I have the same directory nnunet_raw to hold my train TCIA and test set. Now I want to implement transfer learning: For this purpose, I use half of my test set for fine tuning and the other half for testing.n and test set, fine tuning and running inference again.

#2449 Maleyka-gh opened 1 month ago
0
Gnedivad/feat/benchmark dataloader

#2446 gnedivad closed 1 month ago
0
Final Contouring

#2445 tedi14 opened 1 month ago
3
nnUNet configuration.

#2444 Malitha123 opened 1 month ago
2
What should the dataset.json be like for a rgb 2d images?

#2443 aymuos15 closed 1 month ago
2
Title: KeyError: '1'

#2442 skgtohn opened 1 month ago
0
Data naming convention

#2441 Malitha123 opened 1 month ago
0
Issue with moving plans from target dataset and transfering it to the pretraining dataset:

#2440 Ar15Ham closed 1 month ago
2
Not sure where this warning is coming from or what it means?

#2439 aymuos15 closed 1 month ago
6
How does nnU-Net v2 handle the absence of a particular label class during the training and validation process?

#2438 TSbme closed 1 month ago
1
The program gets stuck in the CPU during prediction and cannot produce a result.

#2437 YUjh0729 opened 1 month ago
5
Did not find the expected number of training cases however I have 10 training cases (snapshots of error and json attached)

#2436 MaimoonaAkram closed 2 weeks ago
1
ConvTranspose 3D is not supported on MPS

#2435 frxderic closed 1 month ago
10
Command not found

#2434 maggie-may-22 opened 1 month ago
2
Confusion about Cascade Training

#2433 pzhhhhh2263 opened 1 month ago
3
dimension of predictions results from nnunet differs from the labels

#2432 Ghazal-Danaei closed 1 month ago
0
Training with patience

#2431 25benjaminli opened 1 month ago
1
Fatal FIPS Failure

#2430 vmiller987 opened 1 month ago
1
Trying to train with GPU instead of CPU

#2429 tedi14 opened 1 month ago
13
Update pyproject.toml

#2428 Astarakee closed 1 month ago
0
RuntimeError: Could not find a task with the ID

#2427 MaimoonaAkram opened 1 month ago
4
How to Choose the Best Model Checkpoints and Folds for nnUNetPredictor?

#2426 RewaaHummedi closed 1 month ago
3
arch_kwargs['deep_supervision'] is being updated instead of architecture_kwargs['deep_supervision']

#2425 Xpiee closed 1 month ago
1
RuntimeError: Unable to determine a reader for file ending .nii.gz and file /mnt/evo1/XXXXX.........../la_003_0000.nii.gz (file None means no file provided).

#2424 daming876 opened 1 month ago
3
PROBLEM IN TRAINING STEP RELATED WITH DATA AUGMENTATION

#2423 Csuarezgurruchaga opened 1 month ago
0
Could not find a task with the ID %d

#2422 MaimoonaAkram closed 3 weeks ago
2
not using nonzero mask for normalization

#2421 mariem-m11 closed 1 month ago
0
SystemError: null argument to internal routine

#2420 NastaranVB opened 1 month ago
0
issues during training

#2419 pqu2 opened 1 month ago
1

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