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Hi,
I am using standalone version of PepQuery for protein identification. After trypsin digestion, PepQuery identified below peptides as unique. However, it seems like trypsin digestion with Pepqu…
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#### Current behavior:
Hi all,
The reactions in the subsystem `Peptide metabolism` are all **reversible**, meaning that peptides can be formed from individual amino acids without an ATP cost. Also…
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> good point, I suspect that there will not be many sequence changes for the ones with signal peptide/transit peptide.
I found these where there's a AA difference in the first 30 amin…
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Could you share the dataset used in your research? I have found PXD006109 (136,791 peptides) in your example/data folder, but I cannot locate SAL00031 (159,345 peptides) and SAL00141 (124,710 peptides…
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Hello
I've encountered a similar issue after running pyssw.py. May I ask how you managed to resolve it?
_Originally posted by @a30221274 in https://github.com/twopin/CAMP/issues/27…
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Thanks for providing this good program to predict the protein and peptide interaction. I am current doing a peptide phagy display experiment. And I am wondering is this program can be used for predic…
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Hi,
The FDP calculation at the precursor level for from a proteogenomic search consisting >400,000 peptide precursor is resulting with only zero values. I am not able to figure out the issue here. …
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Hello,
I am using the latest version (3.07.01) of Percolator and trying to run the RESET algorithm using the following command:
percolator -Y --reset-algorithm --num-threads 32 --subset-max-train …
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Hi,
I was trying to run the pRolocVis for my data to visualize the peptides after aggregating the peptides, but was thrown an error. Then i ran the example dataset given for the package in the docume…
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The work is incredibly constructive, particularly for RFdiffusion, which traditionally struggles to produce stable short peptides in the range of 10 to 30 amino acids.
Despite this, after a week of …