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twopin
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CAMP
predicting peptide-protein interactions
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"query_peptide.fasta" and "target_peptide.fasta"
#42
a30221274
opened
3 months ago
2
Step 4 of step1_pdb_process.py
#41
a30221274
closed
3 months ago
0
analyzed file generated by PLIP
#40
a30221274
closed
3 months ago
1
problem unpickling CAMP_pytorch files
#39
dlemas
opened
7 months ago
3
can not load 'CAMP_BS.h5' successfully
#38
ZJL0111
opened
9 months ago
4
Request for Guidance in Step 1 to Step 3 of step2_pepBDB_pep_bindingsites.py
#37
SyedKumailHussainNaqvi
opened
1 year ago
0
Unknown loss function: conditional_BCE; predict_CAMP.py
#36
AnthonyYao7
opened
1 year ago
1
Failed to predict protein-peptide interactions in PPD-bench
#35
xiaoxiao349
closed
1 year ago
3
We couldn't run program
#34
denizozcivi
closed
1 year ago
3
error in CAMP_BS.h5 modelling
#33
xiaoxiao349
closed
1 year ago
5
interpretion of results
#32
mariemghoula
opened
1 year ago
1
peptide_dense_feature_dict generated by step3 has only two features per AA whereas given example data has three features per AA
#31
AnthonyYao7
closed
1 year ago
0
error in preprocessing features
#30
mariemghoula
closed
1 year ago
3
dataset
#29
EityXiao
opened
1 year ago
2
step2_pepBDB_pep_bindingsites.py 'df_part_all' is not defined
#28
AnthonyYao7
closed
1 year ago
1
Questions about creating "query_peptide.fasta" and "target_peptide.fasta"
#27
AnthonyYao7
closed
1 year ago
3
About blast database
#26
cloudaner115
closed
1 year ago
1
fix a broken link in README.md
#25
Qiuk17
opened
1 year ago
0
Could you check PLIPv2.2.2 output vs v1.4.2? current codes only for PLIPv1.4.2?
#24
rocke2020
closed
1 year ago
1
Running CAMP on own data
#23
fteufel
opened
1 year ago
7
How to train my own models
#22
zhyzhyzhy123
closed
1 year ago
5
Ufrc to Main
#21
dlemas
closed
2 years ago
0
Peppi dev
#20
doronsadeh
closed
2 years ago
1
demo data: example output files
#19
dlemas
closed
2 years ago
2
docker or environment.yml
#18
dlemas
closed
2 years ago
1
Hi yipin, about re-implement your project
#17
bbklk
closed
2 years ago
1
About DrugBank Data
#16
milkboylyf
closed
2 years ago
2
Confusion about psi-blast
#15
ZyuanZhang
closed
2 years ago
1
How to download the file uniprot2seq from UniProt Website
#14
milkboylyf
closed
1 year ago
16
step1_pdb_process
#13
liuzhelz
closed
2 years ago
0
About Proprecess data
#12
lbwfff
closed
1 year ago
11
Confusion about PLIP analysis
#11
lbwfff
closed
1 year ago
3
Error in STEP 1
#10
lbwfff
closed
2 years ago
1
SSpro claculation for peptide
#9
zjujdj
closed
2 years ago
1
Problems in the STEP 2: Generate labels of peptide binding residues
#8
Alyssa-vv
closed
1 year ago
7
predict with example code use the test data
#7
leavdragon
closed
2 years ago
1
Self_Attention passes Reshape3.0 to Theano, which requires a 1-D or 2-D input
#6
tsznxx
closed
2 years ago
1
Help wanted
#5
nhowla
closed
2 years ago
1
Where is the directory './peptide_results'?
#4
liang98
closed
2 years ago
2
how to generate feature for model by provide protein and peptide sequenc❓
#3
jixing475
closed
3 years ago
1
ImportError: No module named camp_utils
#2
jixing475
closed
3 years ago
1
Data_construction.txt for data prepare
#1
yaodaojj2018
closed
3 years ago
1