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https://benjaminmount.github.io/2024/08/22/Reading-Notes-Mathematical-Population-Genetics-by-Warren-J-Ewens/
0 Preface笔者从统计学习转入生物信息学习中,种群遗传学(Population Genetics)是笔者最开始感兴趣的一个大方向。为此写下读书笔记,以供及时翻阅,以防遗忘…
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#the script follow the tutorial https://grunwaldlab.github.io/Population_Genetics_in_R/gbs_analysis.html
#script used the dataset provided on the above website and it worked on the gacrc cluster
#t…
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## Overview
There has been some interest in using genotypes called by polyRAD for population genetics analysis. Two pieces of software that have long supported polyploid genotypes are [Structure](…
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Dear Ekaterina, I am currently running GADMA2 for demographic models for two population genetics projects, I would like to add a table like the one you have on your 2023 "GADMA2: more efficient and fl…
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Dear Mr.
Robin Mercier,
I am extracting some sequences with [read.gb/extract.gb](http://read.gb/extract.gb) for a population genetics study and I found what it seems as a bug in "[read.gb](http:…
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Run 50 times `test_rizza`
5 times failed - test_positive_nested_reach_goal
2 times failed - test_positive_organism
```
______________________________ test_positive_nested_reach_goal ____________…
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**Is your feature request related to a problem? Please describe.**
This is the list of Categories on Dockstore, though manual curation is slow:
```
COVID-19
Genomics Toolsets
Alignment
Assembly
Asso…
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I have these error messages for the hello world example.
```
Traceback (most recent call last):
File "/genetics-master/hello_world.py", line 42, in
best, best_score, average_score = dna_…
unnir updated
7 years ago
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Dear Jeremy Gauthier,
We would like to use your popHyRAD.sh script for the analysis of our HyRAD data in the context of population genetics. However, we were unable to find the Perl script referenc…
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I am trying to clump locally via the ld_clump funciton:
Here is my code:
```
IndeSNP=ld_clump(dplyr::tibble(rsid=dat$SNP, pval=dat$pval.exposure, id=dat$id.exposure),
plink_bin= …