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Per #302, all contributors are duly acknowledged within the application. However, individuals who have conducted reviews, generated videos, or developed other promotional materials might not have thei…
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**What is this request referring to?**
Promoter variant
**What is the name you would like SO to give the term?**
promoter_variant
**What is the definition that you would like for this term?**
…
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I am getting the following error when running this code:
"Welcome to Bioconductor
Vignettes contain introductory material; view with
'browseVignettes()'. To cite Bioconductor, see
…
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It has been a while since I have noticed that a few entries would not be returned despite being present in the genome file.
E.g. I would not get promoters back when querying "chrXHg123456" if the loc…
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Deal with duplicated entries. Issue illustrated in the README plot (loci chr4Hg0380431, chr4Hg0383761, or chr5Hg0547031).
Duplicated _loci_ are _locus_ id that appears more than once in the annotat…
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Excellent work on this! The ability to plot data.frame objects is incredibly efficient for feature selection and making edits as desired. Just a few major improvement requests:
1. When multiple fea…
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1- Most should be describable as nucleotide mutations (not urgent)
2- Some can be moved to "promoter swap" if we create a type for that? but should we consider the purpose of the swap (i.e to over…
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Hi, I have some issues with interpreting the output files of prediction: there are EnhancerPredictionsAllPutative.tsv, EnhancerPredictionsFull_threshold0.02_self_promoter.tsv, and EnhancerPredictions…
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Related to #30
need GTF file
can we keep info about each promoter? remove ones with no reads. rather than just summarize across all promoters. could then extract genes with high promoter activi…
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GO:0000433 carbon catabolite repression of transcription from RNA polymerase II promoter by glucose
GO:0000437 carbon catabolite repression of transcription from RNA polymerase II promoter
GO:0001…