-
Currently we just take the UniProt boundaries, which are based on Prosite annotations (profile-based regular expression searches).
We should look into whether there is a more appropriate procedure.
…
-
Hi, thanks for creating this tool. But recently when I use pepquery2 in web application and stand alone version, there was error about the mgf file in s3 bucket is not exist. I attached the screenshot…
-
Hi,
EffectR is a brilliant package for identifying effectors.
I just had a question regarding the identification of proteins with custom motifs. For some reason, when I use a custom pattern, the r…
-
Dear Authors. Could you clarify please.
Is there a stronger threshold for the identification of eukaryotic viruses? Because those contigs, which according to the program belong to eukaryotic viruses …
-
The Protein Translation exercise incorrectly uses the word "protein" in place of "amino acid" in the codon mapping table in the description, and seems to use "protein" somewhat vaguely in the test dat…
-
I am new to analyzing mass spectrometry data, so for my first experiment (an IP experiment with trypsin digestion), we let our mass spec core facility (the experts) run MaxQuant on the raw data for us…
-
Hi,
I would like to get phosphosite level information with the top1 method with a 0.75 cutoff, instead of the 0.9 or 0.99 used to generate the matrixes.
Has the top1 method been implemented in the …
Giu-F updated
3 months ago
-
Run an experiment to evaluate the performance of a simulated annealing gradient descent (SA-GD) approach compared to traditional gradient descent (GD). The purpose of this experiment is to understand …
-
# DeepScore: Community curated scoring, supercharged with AI
(Image taken f…
-
```r
> library(ensembldb)
*** output flushed ***
> library(AnnotationHub)
*** output flushed ***
> ah edb105 ensembldb:::cleanColumns(edb105, listColumns(edb105))
[1] "seq_name" …