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grunwaldlab
/
effectR
An R package to call oomycete effectors
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Close this "Does not find CRN domains in P. infestans proteome"
#26
eriklysoe
opened
6 months ago
0
Additional RXLR motifs
#25
Neato-Nick
closed
1 year ago
0
Mafft alignment failed to save
#24
ALongmuir01
opened
3 years ago
1
Minor documentation fixes
#23
Neato-Nick
closed
4 years ago
0
custom pattern not giving domain positions
#22
savipuray
opened
5 years ago
2
Fatal exception (source file esl_buffer.c, line 1599): zero malloc disallowed
#21
nbutyrate
closed
3 years ago
1
Regarding regex pattern
#20
Ramakrishna0007
closed
3 years ago
1
Regarding regex pattern
#19
Ramakrishna0007
closed
5 years ago
0
HMM failed, please supply a valid absolute path to ORFs
#18
nbutyrate
closed
5 years ago
18
Issue related to HMM threshold
#17
Ramakrishna0007
closed
5 years ago
1
Improved error handling in hmm.search
#16
Neato-Nick
closed
5 years ago
2
Separation of MAFFT and HMM search
#15
Neato-Nick
closed
5 years ago
3
Add a column with the length of the effectR candidate in effector.summary
#14
Tabima
closed
6 years ago
0
Consider adding a few more examples of pathogen effectors
#13
grunwald
closed
6 years ago
2
Safe paths
#12
zkamvar
closed
6 years ago
1
fix canonical form for seqinr url
#11
zkamvar
closed
6 years ago
1
CRAN issues
#10
Tabima
closed
6 years ago
13
fixed potential bug when mafft path is specified as the path to the binary on windows
#9
zachary-foster
closed
7 years ago
0
System which calls
#8
knausb
closed
7 years ago
1
Tests fail when mafft is not installed.
#7
knausb
closed
7 years ago
2
Testing package in windows
#6
Tabima
closed
7 years ago
3
Replace perl one-liners with R equivalent?
#5
zachary-foster
closed
7 years ago
2
Changes to how depdencies are found and other changes
#4
zachary-foster
closed
7 years ago
1
Adapt shiny app
#3
Tabima
closed
7 years ago
0
add biblio on vignette
#2
Tabima
closed
7 years ago
0
Create tests
#1
Tabima
closed
7 years ago
0