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Dear Developer,
Can the PIMMS package be used to impute missing values in proteomics datasets processed with MaxQuant, particularly for post-translational modifications? If so, are there specific r…
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Hello, I'm one of the maintainers of [ark-analysis](https://github.com/angelolab/ark-analysis) and this is shaping up to be a great modernized toolkit for spatial proteomics. Are contributions welcome…
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Hi,
I have been using Tidyproteomics for processing one of my proteomics datasets and encountered a few questions that I couldn’t find clear answers to in the documentation. Specifically, in the prot…
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@katyb @bherr2
I am adding this GH issue so we can track this feature request for the future.
From Yash:
Hey Andi, there are two different sources for protein biomarker expression values for …
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## Aim of the project
This project aims to have full single-cell transcriptomics and tissue proteome expression profiles across different species. These are the possible biological questions:
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Hi,
The hyperlink option 'Filter by genes in paper' in the top banner, underneath project description, does not work for proteomics datasets.
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Hi,
Could the protein abundance values shown in the ‘Results’ tab for DDA (Data Dependent Analysis) proteomics baseline experiments include **ppb** (parts per billion) as the unit displayed next to…
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A next step for Unipept is adding support for a functional analysis next to the existing taxonomic analysis. While the problem sounds similar to the taxonomic one, there are a few problems:
* Avail…
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Datasets for gene feature boundaries, or ncRNA
Data type/ details | method | PMID | First/last author | data source | status | Comment
-- | -- | -- | -- | -- | -- | --
intron/spliceosom…
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The dataset types in the gEAR portal are nice and tidy:
```
mysql> select dtype, count(dtype) from dataset group by dtype;
+-----------------------+--------------+
| dtype | coun…