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Currently, we are experiencing extreme overrepresentation of Hypendymal cells after running InSituType.
It seems to be the go-to celltype when the data is shallow. Although the data has passed QC me…
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Hi Matin,
when I run `bgcflow build report` on the Lactobacillus_delbrueckii example dataset, I get this error for the generation of the eggNOG-Roary markdown:
`Error in rule mkdocs_py_report:
…
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Divid and conquer pipeline giving empty error, cells.X is float32
%%time
with mc.ut.progress_bar():
mc.pl.divide_and_conquer_pipeline(cells, random_seed=123456)
Detect rare gene modules…
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we get reports every now and then that there are some prokaryotic sized cells visually but they also have the nucleus. So there is some rare condition that causes the visual scale to not apply correct…
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Hi @haowenz,
I tend to not force use of the 10X barcode include-list since it is possible there could be valuable information/real cells, but I noticed that some scATACseq data processed via `chromap…
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[CellCNN](https://www.nature.com/articles/ncomms14825) is a powerful new technique to discover rare cell populations that correlate with outcomes variables (eg., Response). It would be powerful to inc…
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**Describe the bug**
In very rare circumstances, the NSCBC outflow boundary conditions can produce states in isolated cells at the boundary that have unphysically high velocities. An ad hoc (but part…
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Hi,
Thank you for developing the InSTAnT package for exploring the patterns of gene-pair co-localization in spatial transcriptomics data.
I have a MERFISH dataset and would like to use this soft…
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## Version of Skyrim Together
`dev` branch, v1.6.7, v1.6.5
No additional mods, only the required ones
## Description
When a party member (guest) has a status of a vampire lord, there's a…
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As a User , I want in the chart , to markup the cells of the fish by rarity [common , uncommon , rare , magic]
according to the cheat sheet color [green , yellow , red , red border] , so I can see t…