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Nanostring-Biostats
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InSituType
An R package for performing cell typing in SMI and other single cell data
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FAQs - reference profiles
#205
crwilliams11
opened
4 weeks ago
1
Error in phase 4: Semisupervised clustering
#204
sykesmarc
opened
2 months ago
1
can you add NSCLC tumor cells in the reference matrix for supervised model?
#203
yubin-ai
opened
4 months ago
1
V2.0 dev
#202
patrickjdanaher
opened
4 months ago
0
bug: error when reference profiles entered as data frame
#201
patrickjdanaher
closed
4 months ago
1
V2.0 cleanup
#200
patrickjdanaher
closed
4 months ago
0
Bug: prepDataForSketching erroring with sparse matrix input
#199
patrickjdanaher
opened
6 months ago
2
Bug: get_anchor_stats() requiring `sds` when not `protein` specified
#198
mgrout81
closed
4 months ago
2
Fa qs
#197
patrickjdanaher
closed
6 months ago
0
Making reference matrix
#196
SGIlabes
closed
4 months ago
2
do you have plan for python script?
#195
yubin-ai
closed
4 months ago
2
obtaining reference profiles
#194
HelenaLC
closed
4 months ago
1
No tumor clusters found in NSCLC supervised vignette
#193
binghama
closed
4 months ago
2
Semi supervised InSituType doesn't stop running
#192
yaelAmitay
closed
10 months ago
0
Problem on running semi-supervised method on reference matrix from Nanostring-CellProfile-Library
#191
Sakura1a2a3a
closed
4 months ago
1
smoothed expression into cohorts
#190
patrickjdanaher
opened
1 year ago
0
insitutype v2 enhancements
#189
patrickjdanaher
closed
4 months ago
1
Added license
#188
davidpross
closed
1 year ago
0
Parallelize openmp
#187
davidpross
closed
1 year ago
0
Merge changes from ADO
#186
davidpross
closed
1 year ago
0
Extract/output modeled/normalized expression data
#185
Pointillomic
opened
1 year ago
0
Bug: If cluster_xpos and cluster_ypos are both not null, clustum is referenced before assignment
#184
eveilyeverafter
closed
4 months ago
1
Bioc fixes
#183
davidpross
closed
1 year ago
0
Review and fix errors and warnings from automated checks in Bioconductor
#182
davidpross
closed
1 year ago
1
faster way to calculate cell-level cosine similarity with celltype profiles
#181
dan11mcguire
closed
1 year ago
0
Subcluster no strays
#180
davidpross
closed
1 year ago
0
Installation failure
#179
zhiiiyang
closed
1 year ago
8
Single cell experiment
#178
davidpross
closed
1 year ago
0
Consider using SummarizedExperiment from Bioconductor
#177
davidpross
closed
1 year ago
0
Add reference to CosMx paper and dataset
#176
davidpross
closed
1 year ago
0
BiocCheck items
#175
davidpross
closed
1 year ago
0
Reknit vignettes
#174
davidpross
closed
1 year ago
0
Row sums bug
#173
davidpross
closed
1 year ago
0
Bioconductor submission
#172
davidpross
closed
1 year ago
0
geosketch runs are redundant
#171
patrickjdanaher
closed
1 year ago
1
checklist for bioC submission
#170
patrickjdanaher
closed
6 months ago
2
implement parallel processing?
#169
patrickjdanaher
closed
1 year ago
2
vignettes: can they be simplified / improved?
#168
patrickjdanaher
opened
1 year ago
1
Semisup vignette
#167
patrickjdanaher
closed
1 year ago
0
new feature: convenience functions for feeding image and spatial data into cohorts
#166
patrickjdanaher
opened
1 year ago
0
refineClusters bug - got duplicate profiles columns
#165
patrickjdanaher
closed
1 year ago
3
bug in chooseClusterNumber
#164
patrickjdanaher
closed
1 year ago
1
extras / possible premium add-ons
#163
patrickjdanaher
closed
4 months ago
0
QCs for reference matrices
#162
patrickjdanaher
opened
2 years ago
0
refineClusters subclustering logic fails when applied to supervised results
#161
patrickjdanaher
closed
1 year ago
5
geoSketch should warn that it needs rownames
#160
patrickjdanaher
closed
1 year ago
1
remove dependency on spatialdecon
#159
patrickjdanaher
closed
1 year ago
2
add supervised vignette and bugfix in refineClusters
#158
patrickjdanaher
closed
2 years ago
0
Add unsupervised clustering vignette
#157
patrickjdanaher
closed
2 years ago
0
error in refineClusters
#156
patrickjdanaher
closed
2 years ago
1
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