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### Description of feature
Hi from Lund!
We discussed Tomte today, and what would be needed for us to get it into production.
One thing that came up is that we would want a contamination check.…
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Hello,
I am trying to match the pdb_chain_id to RNA family labels. Is there a dictionary/json with the mapping?
I wasn't able to find it browsing through the repo.
Thank you in advance
Olivia
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Hi team,
In the Redeconve manual.ipynb, I noticed that you mentioned Redeconve can also be used for bulk RNA-seq deconvolution. Does this mean we can use scRNA as reference to deconvolute bulk RNA …
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![image](https://github.com/user-attachments/assets/9bc9f91a-486d-46d1-9457-f09e12b329d9)
Hi @XueyiDong, I am currently using the sequin data, and was investigating the metadata. What does the counts…
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Hello,
I have added a simple code to perform feature selection in the Program function. To run this code, I need to add the MatrxStats package.
The code runs in my docker environment but fails in …
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![Image](https://github.com/user-attachments/assets/b4257600-230e-4948-8f4c-1d99f4fd0937)
Le RNA W771000173 pointe vers W771001441
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Hi,
We are trying to import 43 studies in the "**crdc/gdc**" folder into our private installation of cbioportal. We got the same error in the validation for every study:
`ERROR: meta_mrna_seq_…
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The link to download the BRIQ data goes to the same page. Is the data the same downloaded from https://apisz.sparks-lab.org:8443/downloads/Resource/RNA/2_RNA_structure_prediction/RNA-BRiQ-data.tar.gz?
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# [BI] RNA-seq data processing using nf-core pipeline | Keun Hong
Link: nf-core rnaseq pipeline
[https://keun-hong.github.io/bioinformatics/rna-seq-nf-core/](https://keun-hong.github.io/bioinformati…
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Mon Sep 30 14:20:15 UTC 2024, there were errors when running autoupdate
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