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### Team Name:
qnyble
### Project Description:
RNAs are nucleotide polymers fundamental to a diversity of elementary biological functions, including the (de)coding and regulation of genes, …
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I suspect (see #3) that RNA folding may play a role in the optimisation.
https://academic.oup.com/nar/article/48/22/12436/5961787
![m_gkaa1053fig1](https://user-images.githubusercontent.com/10217…
Sjors updated
3 years ago
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I will very much like a 2D view of the puzzle, like ingame Eterna. Where I can see the base sequence and the puzzle elements. RNA still behaves like we know it in 2D. I can’t grasp that info nearly as…
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Hi,
AptaSuite asks for using CapR for secondary structures prediction but this program calculates RNA folding. Do you have any suggestions how to involve DNA secondary structure prediction in AptaSu…
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### Description
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### (Required) What is this issue most closely r…
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- [ ] Low hanging fruit: difference in length distributions (compare with human, mouse, amphioxus non-mapping transcripts)
- [ ] Folding structure for mapping vs non-mapping RNAs (or better, putative …
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When I run `cargo build` I get the same error as described in https://github.com/ViennaRNA/ViennaRNA/issues/215. What is the suggested workaround? Is it okay to downgrade to ViennaRNA 2.5.x or is ther…
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The `bin/comradesFold` script contains SGE headers like `#$ -t 1-1000`, and references `$SGE_TASK_ID`, but bin/hyb2 doesn't `qsub` it. As a result, no SGE parameters are set, leading to an error messa…
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Here is the run I am trying to replicate. Below, are the inputs: the two sample sequences, and using DNA parameters.
![image](https://github.com/ViennaRNA/ViennaRNA/assets/124276755/d49417a6-734c-4…
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Awhile ago I made a biopython issue mentioning a small bug I saw in the DNA nearest neighbor values. I caught that because I was using biopython's DNA nearest neighbor energies to bootstrap a library …