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I've used the RRHO2 package to compare gene expression between two groups carried out in two separate studies. On the left is Treatment 1 vs Control for two studies and on the right is Treatment 2 vs …
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Hi, thank you for the package!
I was running a test to see how the heatmap and ven diagram would look if the DE lists were identical, so I run the following code:
```
RRHO_test
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Hello,
Is there a way to extract a quantification for the overlap for each gene?
For example, in the tutorial setp 2.1.0.4, a list of overlapped genes are given
```
## overlap between down reg…
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Hi!
First of all, thanks for all your hard work on developing this and the initial RRHO package!
I am tying to apply the "split" method to my data and retrieve output plots. However, the function …
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Hello,
In my calculations i am using a charged molecules and write charge in censorc file as 1 and spin 0. However, in part 2 ancopt output the charge and spin of molecules are wrong (See below).
Co…
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I am trying to benchmark some of our calculations. Currently, ARC will neglect a single-well hindered rotor with a high barrier. It is reasonable when the PES shape is close to cosine curve, so that R…
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**Describe what you are trying to achieve**
A clear and concise description of what you want to achieve.
I tried to run calculate rate constants using ARC and included the rotors job. Even though th…
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Currently, the only way to do multi-temperature models is with RRHO model. Often for increased accuracy one should use instead the NASA-9 polynomials. The aim of this issue is to extend the library to…
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Small comment for discussion @jbscoggi .
Many CFD codes use as a reference temperature T=0K instead of the 298.15K used by M++.
I recommend the creation of a function like:
shiftingConstantToZeroKe…
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Hello,
I remember we talked about this topic a long time ago, but I am not sure what was the conclusion.
I am trying to use Mutation++ to determine thermal and transport properties in our free-str…