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Hello,
I would like to create singularity machines with rstudio servers for my projects and use them on our HPC cluster.
I started by following your tutorial here: [https://rocker-project.org/use/…
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Hello everyone,
I am trying to run this great toolbox on HPC. So i used apptainer to build a sif image from the corresponding docker container (jqmcginnis/lst-ai:latest). Afterwards, i run this sif…
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On an HPC system I want to start on nodeODM with singularity in a start.slurm file
````
#!/usr/bin/bash
#source .bashrc
#SBATCH --partition=ncpushort
#SBATCH --job-name ODM-CLUSTER
#SBATCH -…
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Hi @rcorces and @paupaiz
Building off our conversation from https://github.com/GreenleafLab/ArchR/issues/1218#issuecomment-1022400089, I am currently trying to set up a containerized ArchR analysi…
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This is a (basic) script to create and populate a CVMFS alien cache for use on systems that do not have access to the internet (but you do require internet access to perform the initial run of the scr…
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# Singularity 容器使用介绍-谢先斌的博客
Singularity 是一个用于HPC(高性能计算)的容器系统,以安全为主,并兼容Docker。
[https://www.xiexianbin.cn/hpc/singularity/index.html](https://www.xiexianbin.cn/hpc/singularity/index.html)
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Hi ZijieJin,
I tried the docker using first on my local but since the base image is not defined and my system is Mac I got incompatibility error! I tried on our hpc, since npc uses singularity I ha…
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parse genome sequences...
imported: 1
filtered & revised: 1
contigs: 1
start annotation...
predict tRNAs...
Traceback (most recent call last):
File "/opt/conda/bin/b…
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### Ask away!
Hello,
I am trying to get the demo model to work using the following script on HPC and I get a couple of error Plus 4 more processes waiting for tasks…
Doing reference based transcr…
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Hello!
I'm trying to pull the Docker container from Docker Hub using Singularity (my university HPC doesn't allow the use of Docker). I ran:
singularity build roadies.sif docker://ang037/roadies:l…