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Please could the the docs include information on how to interpret the output of site_annotations()? I can't work out what the different levels of codon_nonsyn mean (effect?). I also can't quite work o…
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Hello,
I got interesting errors when testing degenotate v1.1.2 on the assembly and annotation for *Eleusine coracana*, which you can download [here](https://www.ncbi.nlm.nih.gov/genome/11014).
T…
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### Describe the doc issue
When I use "make -j8" to build the opencv with cuda 11.6 on ubuntu 22.04, it meets the following errors. Would any one can help me?
**System information:**
...
modules…
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I tried running it but I have an error. Can you please tell me what is the problem?
```
#
# Welcome to degenotate -- Degeneracy annotation for coding transcripts.
# Version 1.2.1 released on May 2…
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Hey,
Trying to run degenotate on a folder contacting a fasta file,
Everything seems to work fine but I get an error at the end and my .bed and .tsv files are empty.
Any help will be appreciated!
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Hello! Today, I tried using degenotate as a conda environment to see if it could be easily incorporated into a snakemake workflow.
These are the exact commands I used:
```
# create degenotate e…
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Example: https://mila.quebec/en/publications/
It would be nice to reuse the same code as in the Mila website. Not sure if that's 'easily' possible via RTD
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I am running Philosopher on a set of TMT10-MS3 proteomic samples from a single experiment. I have augmented my human proteome reference FASTA with custom sequences (I generated decoys for all sequence…
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Hi
I am trying to fit some protein AA variant data into the model and Baylors documents. I can make a protein simple allele document from our data but I am not certain I can always give the correct A…