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Hi,
Thanks for the great work and the released code! I am very interested in your work and have tried to reimplement the work and the results. During the reimplementation, I encountered an issue an…
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Referencing from: ... to 'T1_brain_extractedBrainExtractionMask.nii.gz' file.
This file was created taking the original images from ADNI and performing a skull-stripping processing of them. We use t…
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Make MP2RAGE amenable to `antsBrainExtraction.sh`. One possibility, as @chrisfilo mentioned in #231 is using the inversion echoes https://github.com/poldracklab/pydeface/pull/15.
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Hi!
I ran the code
```
ppr = Preprocessor({'T1':r"/mnt/d/vkr/new/nii/1/z/301_ax_t1w_3d_tfe_.nii.gz",
'T2':r"/mnt/d/vkr/new/nii/1/z/401_ax_st2w_tse.nii.gz",
…
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**This is a(n):**
- [x ] New algorithm
- [x ] Update to an existing algorithm
- [ ] Error
- [ ] Proposal to the Repository
**Details:**
I noticed that the algotihim implemented was created i…
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Tracking issue for failures in the skull-stripping heuristic.
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**This is a(n):**
- [x] New algorithm
- [ ] Update to an existing algorithm
- [ ] Error
- [ ] Proposal to the Repository
**Details:**
The task is to add code for **skull stripping (Image p…
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Dear Authors,
Excellent works!
In your paper, you mentioned using 2656 brain MRI images from four public datasets (ADNI, ABIDE, ADHD, IXI). However, those data sources have many more images than wha…
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This module will remove skull from pre-operative MRI to create brain mask used for brain surface model.
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See poldracklab/mriqc#552, poldracklab/mriqc#554, poldracklab/fmriprep#659.