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- download a data of choice from 10x genomics (you can browse them [here](https://support.10xgenomics.com/spatial-gene-expression/datasets))
- find a way to load them in R with this
- otherwise, d…
giovp updated
3 years ago
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Write a Matlab function to compute the masked spatial statistics by combing existing Matlab functions.
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### Describe the bug
I set up a simple sqlachelmy database with a single geometry:
```python
from sqlalchemy_utils import database_exists, create_database
db_path = 'sqlite:///spatialite_ray.d…
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This is actually more like a research project, since it requires further consideration of what to make of spatial statistics across samples and their comparison in case vs. control. Also what it means…
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I'm not sure we aim at becoming a spatial statistics library but still it would be very useful to begin including more spatstat methods (we already have Ripley e.g.) - let say GWR for example - plus I…
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It would be good if we can also add a display window at bottom showing all parameters in the final_csv file for this particular object. It doesn't have to be well-formatted (a naive table should be fi…
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List of concepts to introduce in the workshop
- How is spatial statistics different from mapping?
- How is spatial statistics different from non-spatial statistics?
- What tools are available?
…
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We’re looking to use squidpy to generate comparative spatial statistics across multiple samples.
I see we can supply the sample key by ```library_key``` in ```squidpy.gr.spatial_neighbors``` so that …
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Hi.
I'm having problems validating a GML dataset.
The Validator report an error during the "lc-gml.a.1: Land Cover feature in dataset" test:
_"The XML documents representing the spatial data se…
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Add quality assessment notebooks to characterize PZ Compute input data.
Content suggestion for the notebook:
### Local properties - 1 sample file randomy selected from `/lustre/t1/cl/lsst/dp0.2`…