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**Describe the bug**
When I try to run the DetailedPatchySwapInteraction in contrib/rovigatti with the attached files, the following occurs
```
(base) josh@Josh-Laptop:~/pypatchy_test/staged_big_oc…
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My to do:
* Finalize cleaning
1) germTempNum
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I wanted to loop over families to extract ligands and interactions for each ligand, but when i run ligand.interactions() i get a KeyError. Even the example code presented on the GitHub page does not w…
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Hi @jhpoelen ,
I am working on connecting data from globi with metabolite data from lotus & enpkg. I am using the 'interactions.tsv.gz' file from the globi website (https://www.globalbioticinterac…
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Current output:
A data.frame containing 7 columns with all the information needed for the basic analysis of recruitment networks and canopy-recruit interactions: canopy species (Canopy), recruit spe…
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1. I went back and checked my merge of lncRNA BLAST results between the three species, I used the "combined_blast.tab" (https://github.com/urol-e5/deep-dive/blob/main/DEF-cross-species/output/08-compa…
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Note related to translator but would be good to have a standard biolink compliant way of stating globi graphs cc @diatomsRcool. I will explain this later @jhpoelen
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The Catalogue of Life has explicit species interaction records, documenting taxon to taxon relations. Neat to see how the [COL Data Package (ColDP) Specification 1.0[(https://github.com/CatalogueOfLif…
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Suggestions:
- [x] C. elegans
- [ ] E. coli
- [x] S. cerevisiae
- [ ] Plant species: http://zzdlab.com/plappisite/index.php
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There are part names in Arctos that indicate interactions. See https://github.com/ArctosDB/arctos/issues/7752
Some of these may have been documented as relationships, some as associated species, an…