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Hi, @andrewsong90, @ajv012
It is a impressive work!
I would like to request access to the pre-extracted patch embeddings and gene expression data for all TCGA cohorts. I understand that the siz…
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Dear developers,
I noticed that the function tcga_surv_get for “methylation” profiles is failing in R Studio (UCSCXenaShiny versions 2.1.0 and 2.2.0) (see print screen 1), as well as in the new on…
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For TCGA Google Big Data Query check
- [x] What are the requirements for accessing Google Big Data Query?
- [x] What is the pricing for accessing Google Big Data Query Check for Big Data Query?
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Hello,
Is there a chance you have access to the complete version of the 'ref.csv' file with normalised gene expression values for all patients in TCGA-BRCA project?
Or do you know how to build thi…
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Thanks for the amazing work!
I have a question regarding the image slides. For each patient, there can be more than one slide. For example, TCGA-5T-A9QA case has both the TCGA-5T-A9QA-01A-01-TSA an…
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## **Objective**: To replicate the BioMuta pipeline to generate a dataset as close as possible to the current BioMuta dataset.
**Presentation Shared with meeting notes**: https://docs.google.com/pr…
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Based on the tutorial "Tutorial-Processing WSIs for MIL" and its recommended parameters, I followed the workflow to extract patches and generate a MIL dataset using CLAM. Then, I used CTransPath to ex…
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Dear team,
Any chance of adding TCGA annotation in the future as well ? That's very useful as well.
Regards
Najeeb
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Consider the following matters to address when adding the option to use the “full” TCGA patients reference cohort
1. **Use static plots** (instead of interactive ones, in particular those with per-…
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When I come to the website, it says: “All slide and diagnostic images from the TCGA program are currently unavailable for download”. Could you share the lung datasets by using a Google Cloud link? : )…