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When I try to search for all DNA-binding transcription factors
this annotation is the first in the list
URS00001B341F_9606 | Homo sapiens (human) hsa-miR-27a-5p | | negative regulation of NF-k…
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> ... transcription factor motif analysis was carried out with the FIMO package, with a p-value threshold of 0.001. A total of 614 human transcription factor binding motifs from the HOCOMOCO database …
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Hello,
According to our rules not to capture specific gene products, I think those terms should be obsoleted:
Number EXP annotations | Term
-- | --
10 | vitamin D receptor binding
39 | thyr…
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One of these seem to be wrong
because
RNA polymerase III complex
and
DNA-binding transcription factor
should not co-occur
PF3D7_0206600 | transcription factor, putative | | RNA po…
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Hello developers,
Very cool tool and great paper.
I was wondering if this tool could be adapted for non-human samples (e.x. cattle)? Or was it specifically developed or trained with hg19 in mi…
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https://github.com/geneontology/go-annotation/issues/2207
create a new rule
DNA-binding transcription factor activity (GO:0003700) should NOT be also annotated to catalytic activity (GO:000382…
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We need to pull a series of data to inform which genes to look for variants in.
There is a[ google doc here](https://docs.google.com/spreadsheets/d/1yX-5sfrC3vrahf4_k7-5rl4Oqzm853ollIMmUo1PTc0/edit…
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http://doi.org/10.1371/journal.pcbi.1005403
> Understanding the cell-specific binding patterns of transcription factors (TFs) is fundamental to studying gene regulatory networks in biological syste…
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Hi,
I am interested in studying protein-nucleic acid couplings, like that of transcription factors and RNA binding proteins. I was looking at the plmc script and was wondering how I should go about…
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Accession: SO:0001668
Synonym: (add) promoter proximal region
Def: DNA segment that ranges from about -250 to -40 relative to +1 of RNA transcription start site, where sequence specific DNA-binding tr…