-
**Description of the bug**
I have run Eukulele within the singularity container provided by pipeline and it seems like URI::Escape is missing in its perl installation, which is causing problems wit…
-
### Description of the bug
I have run Eukulele within the singularity container provided by pipeline and it seems like URI::Escape is missing in its perl installation, which is causing problems with …
-
* link to support ticket: [#2024102360000352](https://otrsdict.ugent.be/otrs/index.pl?Action=AgentTicketZoom;TicketID=173761)
* website: https://github.com/Trinotate/Trinotate/wiki
* installation do…
-
I'm trying to use TransDecoder, but I'm getting this error:
`TransDecoder.LongOrfs -h`
Can't locate URI/Escape.pm in @INC (you may need to install the URI::Escape module) (@INC contains: /opt/anac…
-
Hi there!
I am using EvidenceModeler to produce an annotation.
I am using this data to produce the final annotation:
- Augustus prediction
- Transdecoder annotation
- Alignment of PacBio …
-
Hi Brian,
I followed the steps, but failed at the final step:
`~/miniconda3/opt/transdecoder/util/cdna_alignment_orf_to_genome_orf.pl transcripts.fasta.transdecoder.gff3 transcripts.gff3 transcript…
-
hey,
I first ran TransDecoder.LongOrfs and then Predict and I got that error message:
Selecting best orfsError, cannot find file blastp.outfmt6 at /usr/local/packages/transdecoder-5.7.1/util/se…
-
I ran the pipeline on my laptop like this:
``` sh
time sh lincRNA_pipeline.sh -c sample.data/cuffcompare_out_annot_no_annot.combined.gtf -g sample.data/Brapa_sequence_v1.2.fa -r sample.data/Brassica_…
-
if I remove the assembly, and then `run_eelpond trinity default`, the dammit step fails. output below.
I can get it to work properly by removing the annotation directory. I suspect that there is a …
-
Hi, I am trying to run the sequences section of Trinotate but run into an error with the tmhmmv2 command:
```
[Wed Sep 11 15:47:29 2024] Running CMD: tmhmm --short /data/putnamlab/dbecks/Heatwave_…